Hb_011282_050

Information

Type -
Description -
Location Contig11282: 68545-73950
Sequence    

Annotation

kegg
ID rcu:RCOM_1448090
description diaminopimelate decarboxylase, putative (EC:4.1.1.20)
nr
ID XP_012067238.1
description PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
swissprot
ID Q94A94
description Diaminopimelate decarboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=LYSA2 PE=2 SV=1
trembl
ID A0A067LCH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26782 PE=3 SV=1
Gene Ontology
ID GO:0008836
description diaminopimelate decarboxylase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03875: 68716-73961 , PASA_asmbl_03876: 68716-73949
cDNA
(Sanger)
(ID:Location)		 017_G09.ab1: 68716-69567

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011282_050 0.0 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
2 Hb_001660_100 0.0956412033 - - PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
3 Hb_010422_010 0.1060881693 - - phosphofructokinase [Hevea brasiliensis]
4 Hb_003037_020 0.1066220351 - - hypothetical protein JCGZ_22910 [Jatropha curcas]
5 Hb_000510_340 0.1069790915 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
6 Hb_002007_080 0.1138818762 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
7 Hb_001369_300 0.1181040836 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
8 Hb_003228_110 0.1184960196 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
9 Hb_172112_020 0.1188493832 - - PREDICTED: fumarylacetoacetase [Jatropha curcas]
10 Hb_000076_210 0.1196611704 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
11 Hb_010872_050 0.1202970871 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
12 Hb_003777_290 0.1207011296 - - polypyrimidine tract binding protein, putative [Ricinus communis]
13 Hb_000979_220 0.1212297747 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
14 Hb_001493_150 0.1221648484 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
15 Hb_002471_090 0.1223158705 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
16 Hb_001878_050 0.1226866482 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
17 Hb_000402_150 0.1230125395 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
18 Hb_007894_150 0.1234537851 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
19 Hb_003528_050 0.1242986476 - - protein transporter, putative [Ricinus communis]
20 Hb_000483_310 0.124838443 - - PREDICTED: WD-40 repeat-containing protein MSI4-like [Jatropha curcas]

Gene co-expression network

sample Hb_011282_050 Hb_011282_050 Hb_001660_100 Hb_001660_100 Hb_011282_050--Hb_001660_100 Hb_010422_010 Hb_010422_010 Hb_011282_050--Hb_010422_010 Hb_003037_020 Hb_003037_020 Hb_011282_050--Hb_003037_020 Hb_000510_340 Hb_000510_340 Hb_011282_050--Hb_000510_340 Hb_002007_080 Hb_002007_080 Hb_011282_050--Hb_002007_080 Hb_001369_300 Hb_001369_300 Hb_011282_050--Hb_001369_300 Hb_000260_470 Hb_000260_470 Hb_001660_100--Hb_000260_470 Hb_005271_040 Hb_005271_040 Hb_001660_100--Hb_005271_040 Hb_000853_150 Hb_000853_150 Hb_001660_100--Hb_000853_150 Hb_001660_100--Hb_001369_300 Hb_000663_060 Hb_000663_060 Hb_001660_100--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_001660_100--Hb_001828_180 Hb_010422_010--Hb_002007_080 Hb_002471_290 Hb_002471_290 Hb_010422_010--Hb_002471_290 Hb_010863_010 Hb_010863_010 Hb_010422_010--Hb_010863_010 Hb_010422_010--Hb_000510_340 Hb_000381_120 Hb_000381_120 Hb_010422_010--Hb_000381_120 Hb_003228_110 Hb_003228_110 Hb_010422_010--Hb_003228_110 Hb_011883_020 Hb_011883_020 Hb_003037_020--Hb_011883_020 Hb_003037_020--Hb_003228_110 Hb_003058_260 Hb_003058_260 Hb_003037_020--Hb_003058_260 Hb_000243_260 Hb_000243_260 Hb_003037_020--Hb_000243_260 Hb_021510_010 Hb_021510_010 Hb_003037_020--Hb_021510_010 Hb_002071_070 Hb_002071_070 Hb_003037_020--Hb_002071_070 Hb_011224_160 Hb_011224_160 Hb_000510_340--Hb_011224_160 Hb_002439_010 Hb_002439_010 Hb_000510_340--Hb_002439_010 Hb_000510_340--Hb_001828_180 Hb_003528_050 Hb_003528_050 Hb_000510_340--Hb_003528_050 Hb_011671_270 Hb_011671_270 Hb_000510_340--Hb_011671_270 Hb_000979_220 Hb_000979_220 Hb_000510_340--Hb_000979_220 Hb_000392_420 Hb_000392_420 Hb_002007_080--Hb_000392_420 Hb_000778_010 Hb_000778_010 Hb_002007_080--Hb_000778_010 Hb_007894_150 Hb_007894_150 Hb_002007_080--Hb_007894_150 Hb_164390_010 Hb_164390_010 Hb_002007_080--Hb_164390_010 Hb_000349_260 Hb_000349_260 Hb_002007_080--Hb_000349_260 Hb_000173_280 Hb_000173_280 Hb_002007_080--Hb_000173_280 Hb_001357_310 Hb_001357_310 Hb_001369_300--Hb_001357_310 Hb_001369_300--Hb_000510_340 Hb_000402_150 Hb_000402_150 Hb_001369_300--Hb_000402_150 Hb_001369_300--Hb_005271_040 Hb_000875_080 Hb_000875_080 Hb_001369_300--Hb_000875_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.74253 8.61083 17.9456 8.51 5.02102 5.82686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.08819 7.85621 12.0558 20.5187 9.1701

CAGE analysis