Hb_011282_060

Information

Type -
Description -
Location Contig11282: 92367-97765
Sequence    

Annotation

kegg
ID rcu:RCOM_1447960
description bifunctional dihydrofolate reductase-thymidylate synthase, putative (EC:1.5.1.3 2.1.1.45)
nr
ID XP_012067239.1
description PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
swissprot
ID P51820
description Bifunctional dihydrofolate reductase-thymidylate synthase OS=Glycine max PE=1 SV=1
trembl
ID A0A067LBA7
description Bifunctional dihydrofolate reductase-thymidylate synthase OS=Jatropha curcas GN=JCGZ_26783 PE=3 SV=1
Gene Ontology
ID GO:0004146
description bifunctional dihydrofolate reductase-thymidylate synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03878: 92608-93489 , PASA_asmbl_03880: 93490-96918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011282_060 0.0 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
2 Hb_052805_010 0.0724684702 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
3 Hb_006570_160 0.076244304 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
4 Hb_003528_030 0.083293509 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
5 Hb_001227_130 0.0841876702 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
6 Hb_001269_330 0.0855170528 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
7 Hb_010407_140 0.0863469208 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
8 Hb_000720_040 0.0877368486 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
9 Hb_007481_010 0.0898937605 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
10 Hb_000260_470 0.0914300028 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
11 Hb_002351_030 0.0924654557 - - catalytic, putative [Ricinus communis]
12 Hb_011214_160 0.0934167306 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
13 Hb_000352_300 0.0959381492 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
14 Hb_005271_040 0.0963111197 - - PREDICTED: serine racemase [Jatropha curcas]
15 Hb_000666_100 0.0968159695 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
16 Hb_182782_010 0.0984867482 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002676_120 0.0987369099 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
18 Hb_006002_040 0.1002665795 - - PREDICTED: uncharacterized protein LOC105638085 [Jatropha curcas]
19 Hb_001799_030 0.1003798278 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
20 Hb_000163_090 0.1009102755 - - gamma-tubulin complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_011282_060 Hb_011282_060 Hb_052805_010 Hb_052805_010 Hb_011282_060--Hb_052805_010 Hb_006570_160 Hb_006570_160 Hb_011282_060--Hb_006570_160 Hb_003528_030 Hb_003528_030 Hb_011282_060--Hb_003528_030 Hb_001227_130 Hb_001227_130 Hb_011282_060--Hb_001227_130 Hb_001269_330 Hb_001269_330 Hb_011282_060--Hb_001269_330 Hb_010407_140 Hb_010407_140 Hb_011282_060--Hb_010407_140 Hb_000720_040 Hb_000720_040 Hb_052805_010--Hb_000720_040 Hb_001366_370 Hb_001366_370 Hb_052805_010--Hb_001366_370 Hb_000510_300 Hb_000510_300 Hb_052805_010--Hb_000510_300 Hb_000666_100 Hb_000666_100 Hb_052805_010--Hb_000666_100 Hb_000783_010 Hb_000783_010 Hb_052805_010--Hb_000783_010 Hb_000260_470 Hb_000260_470 Hb_006570_160--Hb_000260_470 Hb_005271_040 Hb_005271_040 Hb_006570_160--Hb_005271_040 Hb_006570_160--Hb_010407_140 Hb_002676_120 Hb_002676_120 Hb_006570_160--Hb_002676_120 Hb_006570_160--Hb_000666_100 Hb_007481_010 Hb_007481_010 Hb_003528_030--Hb_007481_010 Hb_000352_300 Hb_000352_300 Hb_003528_030--Hb_000352_300 Hb_003683_020 Hb_003683_020 Hb_003528_030--Hb_003683_020 Hb_012498_010 Hb_012498_010 Hb_003528_030--Hb_012498_010 Hb_000477_050 Hb_000477_050 Hb_003528_030--Hb_000477_050 Hb_004990_010 Hb_004990_010 Hb_003528_030--Hb_004990_010 Hb_000445_050 Hb_000445_050 Hb_001227_130--Hb_000445_050 Hb_000963_040 Hb_000963_040 Hb_001227_130--Hb_000963_040 Hb_003119_090 Hb_003119_090 Hb_001227_130--Hb_003119_090 Hb_000879_180 Hb_000879_180 Hb_001227_130--Hb_000879_180 Hb_002351_030 Hb_002351_030 Hb_001227_130--Hb_002351_030 Hb_001269_330--Hb_007481_010 Hb_000256_150 Hb_000256_150 Hb_001269_330--Hb_000256_150 Hb_001087_030 Hb_001087_030 Hb_001269_330--Hb_001087_030 Hb_019181_040 Hb_019181_040 Hb_001269_330--Hb_019181_040 Hb_001269_330--Hb_012498_010 Hb_000046_500 Hb_000046_500 Hb_001269_330--Hb_000046_500 Hb_007894_010 Hb_007894_010 Hb_010407_140--Hb_007894_010 Hb_001633_080 Hb_001633_080 Hb_010407_140--Hb_001633_080 Hb_000197_020 Hb_000197_020 Hb_010407_140--Hb_000197_020 Hb_000127_140 Hb_000127_140 Hb_010407_140--Hb_000127_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.48127 6.23362 18.9468 22.5091 11.3402 12.6865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4611 9.1999 13.4484 14.5197 8.21869

CAGE analysis