Hb_011287_060

Information

Type -
Description -
Location Contig11287: 40900-44556
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011287_060 0.0 - - -
2 Hb_054232_020 0.1548369887 - - Potassium channel SKOR, putative [Ricinus communis]
3 Hb_021409_120 0.1582371075 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
4 Hb_071072_010 0.1632372216 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_005539_100 0.1648141102 - - nucleoside transporter, putative [Ricinus communis]
6 Hb_000366_050 0.1736525413 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
7 Hb_172676_010 0.1741965809 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
8 Hb_006483_090 0.1792286321 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
9 Hb_002809_120 0.1860271133 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
10 Hb_002849_180 0.1876932229 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
11 Hb_000748_110 0.1884024917 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
12 Hb_001141_060 0.1884603532 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
13 Hb_002344_080 0.1894595772 - - PREDICTED: protein YLS2-like [Populus euphratica]
14 Hb_007483_080 0.1895106646 - - hypothetical protein RCOM_0634810 [Ricinus communis]
15 Hb_000100_210 0.1899012938 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
16 Hb_000077_210 0.1929091493 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
17 Hb_023386_050 0.1934614996 - - conserved hypothetical protein [Ricinus communis]
18 Hb_033312_090 0.1937428659 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
19 Hb_005000_050 0.197047024 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
20 Hb_001158_120 0.1971306631 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011287_060 Hb_011287_060 Hb_054232_020 Hb_054232_020 Hb_011287_060--Hb_054232_020 Hb_021409_120 Hb_021409_120 Hb_011287_060--Hb_021409_120 Hb_071072_010 Hb_071072_010 Hb_011287_060--Hb_071072_010 Hb_005539_100 Hb_005539_100 Hb_011287_060--Hb_005539_100 Hb_000366_050 Hb_000366_050 Hb_011287_060--Hb_000366_050 Hb_172676_010 Hb_172676_010 Hb_011287_060--Hb_172676_010 Hb_002609_290 Hb_002609_290 Hb_054232_020--Hb_002609_290 Hb_007193_030 Hb_007193_030 Hb_054232_020--Hb_007193_030 Hb_004218_080 Hb_004218_080 Hb_054232_020--Hb_004218_080 Hb_054232_020--Hb_005539_100 Hb_011381_070 Hb_011381_070 Hb_054232_020--Hb_011381_070 Hb_002809_120 Hb_002809_120 Hb_054232_020--Hb_002809_120 Hb_000770_010 Hb_000770_010 Hb_021409_120--Hb_000770_010 Hb_006483_090 Hb_006483_090 Hb_021409_120--Hb_006483_090 Hb_004032_330 Hb_004032_330 Hb_021409_120--Hb_004032_330 Hb_000270_250 Hb_000270_250 Hb_021409_120--Hb_000270_250 Hb_000500_230 Hb_000500_230 Hb_021409_120--Hb_000500_230 Hb_000007_440 Hb_000007_440 Hb_021409_120--Hb_000007_440 Hb_071072_010--Hb_000366_050 Hb_071072_010--Hb_005539_100 Hb_032202_050 Hb_032202_050 Hb_071072_010--Hb_032202_050 Hb_071072_010--Hb_011381_070 Hb_002073_020 Hb_002073_020 Hb_071072_010--Hb_002073_020 Hb_000748_110 Hb_000748_110 Hb_071072_010--Hb_000748_110 Hb_005539_100--Hb_172676_010 Hb_005539_100--Hb_011381_070 Hb_001158_120 Hb_001158_120 Hb_005539_100--Hb_001158_120 Hb_005539_100--Hb_000366_050 Hb_005539_100--Hb_002073_020 Hb_000369_070 Hb_000369_070 Hb_005539_100--Hb_000369_070 Hb_000366_050--Hb_011381_070 Hb_000366_050--Hb_001158_120 Hb_000366_050--Hb_002609_290 Hb_000329_790 Hb_000329_790 Hb_000366_050--Hb_000329_790 Hb_001294_040 Hb_001294_040 Hb_000366_050--Hb_001294_040 Hb_006052_060 Hb_006052_060 Hb_172676_010--Hb_006052_060 Hb_172676_010--Hb_002073_020 Hb_002874_170 Hb_002874_170 Hb_172676_010--Hb_002874_170 Hb_061908_020 Hb_061908_020 Hb_172676_010--Hb_061908_020 Hb_001951_240 Hb_001951_240 Hb_172676_010--Hb_001951_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.242729 0.160682 0.116187 0.0374066 0.0354271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0592858 0.141684

CAGE analysis