Hb_011287_070

Information

Type -
Description -
Location Contig11287: 53464-55247
Sequence    

Annotation

kegg
ID gmx:102669165
description uncharacterized LOC102669165
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03888: 39299-58827 , PASA_asmbl_03889: 55422-55918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011287_070 0.0 - - -
2 Hb_063866_010 0.205537998 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
3 Hb_000454_160 0.2116932711 - - amidophosphoribosyltransferase, putative [Ricinus communis]
4 Hb_007594_110 0.2203688919 - - fructokinase [Manihot esculenta]
5 Hb_173808_010 0.2211014837 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
6 Hb_001793_030 0.2241034463 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
7 Hb_003906_060 0.2270795288 - - hypothetical protein VITISV_022975 [Vitis vinifera]
8 Hb_097021_010 0.2279522607 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
9 Hb_041813_040 0.2372533769 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
10 Hb_012404_080 0.23964479 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
11 Hb_005154_090 0.2408311206 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_041813_050 0.2420667544 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
13 Hb_000414_180 0.2426344079 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
14 Hb_011609_210 0.2426607575 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
15 Hb_102602_020 0.2450850282 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
16 Hb_003186_040 0.2461709285 - - PREDICTED: protein DENND6A [Jatropha curcas]
17 Hb_003375_050 0.2463274455 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000683_080 0.2466743765 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
19 Hb_041813_010 0.2480416597 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002759_040 0.2482094853 - - BnaA09g29830D [Brassica napus]

Gene co-expression network

sample Hb_011287_070 Hb_011287_070 Hb_063866_010 Hb_063866_010 Hb_011287_070--Hb_063866_010 Hb_000454_160 Hb_000454_160 Hb_011287_070--Hb_000454_160 Hb_007594_110 Hb_007594_110 Hb_011287_070--Hb_007594_110 Hb_173808_010 Hb_173808_010 Hb_011287_070--Hb_173808_010 Hb_001793_030 Hb_001793_030 Hb_011287_070--Hb_001793_030 Hb_003906_060 Hb_003906_060 Hb_011287_070--Hb_003906_060 Hb_031330_020 Hb_031330_020 Hb_063866_010--Hb_031330_020 Hb_011053_020 Hb_011053_020 Hb_063866_010--Hb_011053_020 Hb_183963_010 Hb_183963_010 Hb_063866_010--Hb_183963_010 Hb_002527_040 Hb_002527_040 Hb_063866_010--Hb_002527_040 Hb_002894_090 Hb_002894_090 Hb_063866_010--Hb_002894_090 Hb_007933_030 Hb_007933_030 Hb_063866_010--Hb_007933_030 Hb_012404_080 Hb_012404_080 Hb_000454_160--Hb_012404_080 Hb_011609_210 Hb_011609_210 Hb_000454_160--Hb_011609_210 Hb_018272_050 Hb_018272_050 Hb_000454_160--Hb_018272_050 Hb_000977_150 Hb_000977_150 Hb_000454_160--Hb_000977_150 Hb_002518_180 Hb_002518_180 Hb_000454_160--Hb_002518_180 Hb_000414_180 Hb_000414_180 Hb_000454_160--Hb_000414_180 Hb_002759_040 Hb_002759_040 Hb_007594_110--Hb_002759_040 Hb_000163_110 Hb_000163_110 Hb_007594_110--Hb_000163_110 Hb_000963_090 Hb_000963_090 Hb_007594_110--Hb_000963_090 Hb_000329_080 Hb_000329_080 Hb_007594_110--Hb_000329_080 Hb_009620_060 Hb_009620_060 Hb_007594_110--Hb_009620_060 Hb_000108_250 Hb_000108_250 Hb_007594_110--Hb_000108_250 Hb_001080_030 Hb_001080_030 Hb_173808_010--Hb_001080_030 Hb_000640_260 Hb_000640_260 Hb_173808_010--Hb_000640_260 Hb_003029_140 Hb_003029_140 Hb_173808_010--Hb_003029_140 Hb_052946_010 Hb_052946_010 Hb_173808_010--Hb_052946_010 Hb_000731_290 Hb_000731_290 Hb_173808_010--Hb_000731_290 Hb_078477_060 Hb_078477_060 Hb_173808_010--Hb_078477_060 Hb_001793_030--Hb_007933_030 Hb_168031_020 Hb_168031_020 Hb_001793_030--Hb_168031_020 Hb_001793_030--Hb_078477_060 Hb_001080_150 Hb_001080_150 Hb_001793_030--Hb_001080_150 Hb_001793_030--Hb_000329_080 Hb_001793_030--Hb_000414_180 Hb_067664_010 Hb_067664_010 Hb_003906_060--Hb_067664_010 Hb_000130_200 Hb_000130_200 Hb_003906_060--Hb_000130_200 Hb_178968_080 Hb_178968_080 Hb_003906_060--Hb_178968_080 Hb_000032_600 Hb_000032_600 Hb_003906_060--Hb_000032_600 Hb_003906_060--Hb_000977_150 Hb_003906_060--Hb_012404_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0391292 0.120493 0.0497238 0.144344 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0716454 0 0.101464 0.159862 0.675332

CAGE analysis