Hb_011310_060

Information

Type -
Description -
Location Contig11310: 20619-22824
Sequence    

Annotation

kegg
ID tcc:TCM_038396
description Alba DNA/RNA-binding protein
nr
ID XP_012076600.1
description PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
swissprot
ID O22969
description Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1
trembl
ID A0A067KBL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07182 PE=4 SV=1
Gene Ontology
ID GO:0003676
description alba dna rna-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03903: 20656-22831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_060 0.0 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
2 Hb_002293_030 0.0816690589 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
3 Hb_000134_020 0.0897380179 - - thioredoxin-like family protein [Hevea brasiliensis]
4 Hb_002234_210 0.1125558779 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
5 Hb_171900_050 0.1132140022 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009252_130 0.1134770773 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
7 Hb_000190_060 0.118585326 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
8 Hb_010810_020 0.1221207156 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]
9 Hb_001616_020 0.1245838547 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
10 Hb_002897_080 0.1260322216 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
11 Hb_017711_010 0.1263193788 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
12 Hb_034585_040 0.1294421335 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
13 Hb_002781_020 0.130138107 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
14 Hb_007441_180 0.1314447481 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000645_190 0.1315791268 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
16 Hb_000487_320 0.1335066725 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
17 Hb_003638_080 0.1343568113 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
18 Hb_000526_150 0.1353854424 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
19 Hb_000096_060 0.1371892586 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000563_590 0.1375793563 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_011310_060 Hb_011310_060 Hb_002293_030 Hb_002293_030 Hb_011310_060--Hb_002293_030 Hb_000134_020 Hb_000134_020 Hb_011310_060--Hb_000134_020 Hb_002234_210 Hb_002234_210 Hb_011310_060--Hb_002234_210 Hb_171900_050 Hb_171900_050 Hb_011310_060--Hb_171900_050 Hb_009252_130 Hb_009252_130 Hb_011310_060--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_011310_060--Hb_000190_060 Hb_017711_010 Hb_017711_010 Hb_002293_030--Hb_017711_010 Hb_008847_020 Hb_008847_020 Hb_002293_030--Hb_008847_020 Hb_002293_030--Hb_002234_210 Hb_000526_150 Hb_000526_150 Hb_002293_030--Hb_000526_150 Hb_000634_050 Hb_000634_050 Hb_002293_030--Hb_000634_050 Hb_000645_190 Hb_000645_190 Hb_000134_020--Hb_000645_190 Hb_003988_040 Hb_003988_040 Hb_000134_020--Hb_003988_040 Hb_000134_020--Hb_002293_030 Hb_003058_220 Hb_003058_220 Hb_000134_020--Hb_003058_220 Hb_003638_080 Hb_003638_080 Hb_000134_020--Hb_003638_080 Hb_004958_050 Hb_004958_050 Hb_002234_210--Hb_004958_050 Hb_002234_210--Hb_000634_050 Hb_003058_070 Hb_003058_070 Hb_002234_210--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_002234_210--Hb_000417_110 Hb_002234_210--Hb_000190_060 Hb_002234_210--Hb_009252_130 Hb_010810_020 Hb_010810_020 Hb_171900_050--Hb_010810_020 Hb_000545_150 Hb_000545_150 Hb_171900_050--Hb_000545_150 Hb_001584_070 Hb_001584_070 Hb_171900_050--Hb_001584_070 Hb_000365_380 Hb_000365_380 Hb_171900_050--Hb_000365_380 Hb_000317_340 Hb_000317_340 Hb_171900_050--Hb_000317_340 Hb_000580_080 Hb_000580_080 Hb_171900_050--Hb_000580_080 Hb_009252_130--Hb_000190_060 Hb_000815_270 Hb_000815_270 Hb_009252_130--Hb_000815_270 Hb_001616_020 Hb_001616_020 Hb_009252_130--Hb_001616_020 Hb_000563_590 Hb_000563_590 Hb_009252_130--Hb_000563_590 Hb_000061_480 Hb_000061_480 Hb_009252_130--Hb_000061_480 Hb_001621_180 Hb_001621_180 Hb_009252_130--Hb_001621_180 Hb_001214_030 Hb_001214_030 Hb_000190_060--Hb_001214_030 Hb_000190_060--Hb_000417_110 Hb_000483_160 Hb_000483_160 Hb_000190_060--Hb_000483_160 Hb_000025_530 Hb_000025_530 Hb_000190_060--Hb_000025_530 Hb_000190_060--Hb_003058_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.7707 11.1366 19.2786 20.309 94.5849 147.61
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
182.066 374.008 65.0548 26.8258 23.8647

CAGE analysis