Hb_011310_080

Information

Type -
Description -
Location Contig11310: 30444-36807
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26840g
description POPTRDRAFT_417571; hypothetical protein
nr
ID XP_002308659.2
description hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
swissprot
ID Q9ZP41
description EG45-like domain containing protein OS=Citrus jambhiri GN=CjBAp12 PE=1 SV=1
trembl
ID B9HA36
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26840g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_080 0.0 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
2 Hb_009615_120 0.1640640352 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
3 Hb_000670_100 0.1717581447 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 3, chloroplastic-like [Jatropha curcas]
4 Hb_000001_130 0.1845303815 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
5 Hb_000920_130 0.1974014287 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002704_070 0.1999959669 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
7 Hb_000122_210 0.201103798 - - -
8 Hb_005227_040 0.2030042059 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
9 Hb_021888_070 0.2039599049 - - Putative CCR4-associated factor 1 like 11 [Glycine soja]
10 Hb_000086_630 0.2040525881 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
11 Hb_024468_010 0.205659135 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
12 Hb_004218_020 0.2075285714 - - conserved hypothetical protein [Ricinus communis]
13 Hb_183612_070 0.207676172 - - unnamed protein product [Vitis vinifera]
14 Hb_000329_290 0.2081990171 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
15 Hb_000297_150 0.2106638832 - - PREDICTED: uncharacterized protein LOC103500908 [Cucumis melo]
16 Hb_003090_260 0.2114505677 - - hypothetical protein JCGZ_25097 [Jatropha curcas]
17 Hb_001171_050 0.2119910614 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
18 Hb_003124_110 0.2139807632 - - hypothetical protein VITISV_026680 [Vitis vinifera]
19 Hb_009778_060 0.2140915118 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
20 Hb_002043_030 0.214144689 - - hypothetical protein RCOM_1486170 [Ricinus communis]

Gene co-expression network

sample Hb_011310_080 Hb_011310_080 Hb_009615_120 Hb_009615_120 Hb_011310_080--Hb_009615_120 Hb_000670_100 Hb_000670_100 Hb_011310_080--Hb_000670_100 Hb_000001_130 Hb_000001_130 Hb_011310_080--Hb_000001_130 Hb_000920_130 Hb_000920_130 Hb_011310_080--Hb_000920_130 Hb_002704_070 Hb_002704_070 Hb_011310_080--Hb_002704_070 Hb_000122_210 Hb_000122_210 Hb_011310_080--Hb_000122_210 Hb_000329_290 Hb_000329_290 Hb_009615_120--Hb_000329_290 Hb_000656_310 Hb_000656_310 Hb_009615_120--Hb_000656_310 Hb_032717_060 Hb_032717_060 Hb_009615_120--Hb_032717_060 Hb_001214_180 Hb_001214_180 Hb_009615_120--Hb_001214_180 Hb_140459_010 Hb_140459_010 Hb_009615_120--Hb_140459_010 Hb_009778_060 Hb_009778_060 Hb_009615_120--Hb_009778_060 Hb_004108_060 Hb_004108_060 Hb_000670_100--Hb_004108_060 Hb_000297_150 Hb_000297_150 Hb_000670_100--Hb_000297_150 Hb_012627_040 Hb_012627_040 Hb_000670_100--Hb_012627_040 Hb_000282_080 Hb_000282_080 Hb_000670_100--Hb_000282_080 Hb_004241_020 Hb_004241_020 Hb_000670_100--Hb_004241_020 Hb_005227_040 Hb_005227_040 Hb_000001_130--Hb_005227_040 Hb_000215_360 Hb_000215_360 Hb_000001_130--Hb_000215_360 Hb_012760_110 Hb_012760_110 Hb_000001_130--Hb_012760_110 Hb_000086_630 Hb_000086_630 Hb_000001_130--Hb_000086_630 Hb_001242_130 Hb_001242_130 Hb_000001_130--Hb_001242_130 Hb_001604_150 Hb_001604_150 Hb_000001_130--Hb_001604_150 Hb_001269_370 Hb_001269_370 Hb_000920_130--Hb_001269_370 Hb_002259_170 Hb_002259_170 Hb_000920_130--Hb_002259_170 Hb_000920_130--Hb_000086_630 Hb_000506_110 Hb_000506_110 Hb_000920_130--Hb_000506_110 Hb_000270_120 Hb_000270_120 Hb_000920_130--Hb_000270_120 Hb_001571_060 Hb_001571_060 Hb_000920_130--Hb_001571_060 Hb_002311_360 Hb_002311_360 Hb_002704_070--Hb_002311_360 Hb_000230_500 Hb_000230_500 Hb_002704_070--Hb_000230_500 Hb_009803_050 Hb_009803_050 Hb_002704_070--Hb_009803_050 Hb_002043_030 Hb_002043_030 Hb_002704_070--Hb_002043_030 Hb_030565_030 Hb_030565_030 Hb_002704_070--Hb_030565_030 Hb_002988_040 Hb_002988_040 Hb_002704_070--Hb_002988_040 Hb_000283_080 Hb_000283_080 Hb_000122_210--Hb_000283_080 Hb_007747_210 Hb_007747_210 Hb_000122_210--Hb_007747_210 Hb_000120_040 Hb_000120_040 Hb_000122_210--Hb_000120_040 Hb_006420_050 Hb_006420_050 Hb_000122_210--Hb_006420_050 Hb_042202_030 Hb_042202_030 Hb_000122_210--Hb_042202_030 Hb_002338_050 Hb_002338_050 Hb_000122_210--Hb_002338_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.058949 0.618947 0.323996 0.102062 0.0276474 0.266749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.678238 0.533294 0.675038 0.410182 0.963107

CAGE analysis