Hb_011310_090

Information

Type -
Description -
Location Contig11310: 37662-39485
Sequence    

Annotation

kegg
ID vvi:100266182
description putative ATPase N2B
nr
ID XP_010648658.1
description PREDICTED: putative ATPase N2B isoform X3 [Vitis vinifera]
swissprot
ID Q8WV93
description Lactation elevated protein 1 OS=Homo sapiens GN=LACE1 PE=1 SV=2
trembl
ID D7SUS6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03906: 36372-41553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_090 0.0 - - PREDICTED: putative ATPase N2B isoform X3 [Vitis vinifera]
2 Hb_002518_110 0.1856502182 - - 1-amino-cyclopropane-1-carboxylic acid oxidase [Manihot esculenta]
3 Hb_001141_300 0.2477227542 - - -
4 Hb_017098_010 0.2483357085 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_001631_100 0.257266503 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_142328_010 0.2574607657 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
7 Hb_002636_040 0.2579687243 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
8 Hb_000261_400 0.2600554275 - - hypothetical protein JCGZ_01125 [Jatropha curcas]
9 Hb_149225_010 0.2629463791 - - DNA-directed RNA polymerase II subunit rpb4, putative isoform 4, partial [Theobroma cacao]
10 Hb_083641_010 0.2640495464 - - SECY isoform 1 [Theobroma cacao]
11 Hb_138781_010 0.2687647099 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
12 Hb_004244_010 0.2704912518 - - hypothetical protein JCGZ_06191 [Jatropha curcas]
13 Hb_004738_110 0.2714503032 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
14 Hb_002154_070 0.272034223 desease resistance Gene Name: AAA_25 hypothetical protein Csa_6G014750 [Cucumis sativus]
15 Hb_000010_140 0.2738087534 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_002986_060 0.2752367485 - - hypothetical protein M569_15879, partial [Genlisea aurea]
17 Hb_002400_330 0.2774867779 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
18 Hb_004333_050 0.2785009234 - - -
19 Hb_143629_060 0.2792716453 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
20 Hb_032920_100 0.2802675273 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_011310_090 Hb_011310_090 Hb_002518_110 Hb_002518_110 Hb_011310_090--Hb_002518_110 Hb_001141_300 Hb_001141_300 Hb_011310_090--Hb_001141_300 Hb_017098_010 Hb_017098_010 Hb_011310_090--Hb_017098_010 Hb_001631_100 Hb_001631_100 Hb_011310_090--Hb_001631_100 Hb_142328_010 Hb_142328_010 Hb_011310_090--Hb_142328_010 Hb_002636_040 Hb_002636_040 Hb_011310_090--Hb_002636_040 Hb_002518_110--Hb_002636_040 Hb_002518_110--Hb_017098_010 Hb_008123_010 Hb_008123_010 Hb_002518_110--Hb_008123_010 Hb_090530_010 Hb_090530_010 Hb_002518_110--Hb_090530_010 Hb_004244_010 Hb_004244_010 Hb_002518_110--Hb_004244_010 Hb_083641_010 Hb_083641_010 Hb_001141_300--Hb_083641_010 Hb_001252_200 Hb_001252_200 Hb_001141_300--Hb_001252_200 Hb_001005_150 Hb_001005_150 Hb_001141_300--Hb_001005_150 Hb_000087_030 Hb_000087_030 Hb_001141_300--Hb_000087_030 Hb_004724_470 Hb_004724_470 Hb_001141_300--Hb_004724_470 Hb_001141_300--Hb_142328_010 Hb_016760_010 Hb_016760_010 Hb_017098_010--Hb_016760_010 Hb_003777_250 Hb_003777_250 Hb_017098_010--Hb_003777_250 Hb_003632_030 Hb_003632_030 Hb_017098_010--Hb_003632_030 Hb_011616_020 Hb_011616_020 Hb_017098_010--Hb_011616_020 Hb_000529_140 Hb_000529_140 Hb_017098_010--Hb_000529_140 Hb_001080_150 Hb_001080_150 Hb_017098_010--Hb_001080_150 Hb_000261_410 Hb_000261_410 Hb_001631_100--Hb_000261_410 Hb_000800_110 Hb_000800_110 Hb_001631_100--Hb_000800_110 Hb_000575_100 Hb_000575_100 Hb_001631_100--Hb_000575_100 Hb_013459_010 Hb_013459_010 Hb_001631_100--Hb_013459_010 Hb_001631_100--Hb_011616_020 Hb_001631_100--Hb_003632_030 Hb_002079_050 Hb_002079_050 Hb_142328_010--Hb_002079_050 Hb_002079_030 Hb_002079_030 Hb_142328_010--Hb_002079_030 Hb_006810_030 Hb_006810_030 Hb_142328_010--Hb_006810_030 Hb_012194_050 Hb_012194_050 Hb_142328_010--Hb_012194_050 Hb_001898_210 Hb_001898_210 Hb_142328_010--Hb_001898_210 Hb_152202_010 Hb_152202_010 Hb_142328_010--Hb_152202_010 Hb_002636_040--Hb_003632_030 Hb_008092_060 Hb_008092_060 Hb_002636_040--Hb_008092_060 Hb_005288_110 Hb_005288_110 Hb_002636_040--Hb_005288_110 Hb_001396_240 Hb_001396_240 Hb_002636_040--Hb_001396_240 Hb_004466_050 Hb_004466_050 Hb_002636_040--Hb_004466_050 Hb_001408_030 Hb_001408_030 Hb_002636_040--Hb_001408_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0917781 0.179436 0.452739 0.903811 0.699481 2.35193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.171301 0.270084 0.370612 2.07344

CAGE analysis