Hb_011310_130

Information

Type -
Description -
Location Contig11310: 65291-74429
Sequence    

Annotation

kegg
ID tcc:TCM_037013
description DEAD/DEAH box RNA helicase family protein isoform 1
nr
ID XP_007011878.1
description DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
swissprot
ID Q9LFN6
description DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=1 SV=2
trembl
ID A0A061GK01
description DEAD/DEAH box RNA helicase family protein isoform 1 OS=Theobroma cacao GN=TCM_037013 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 56 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03908: 67090-74374 , PASA_asmbl_03909: 67090-74374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_130 0.0 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
2 Hb_002942_050 0.0588781864 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
3 Hb_003549_090 0.0611532034 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
4 Hb_001635_040 0.0669599854 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
5 Hb_000777_050 0.0675031075 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
6 Hb_001163_120 0.0688148171 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_011310_210 0.069854146 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
8 Hb_000007_280 0.0713072403 - - hypothetical protein VITISV_000066 [Vitis vinifera]
9 Hb_000162_030 0.0758335176 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
10 Hb_004631_190 0.0767144397 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
11 Hb_019654_040 0.0787186958 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
12 Hb_000933_010 0.0790406275 - - -
13 Hb_001269_230 0.0808405416 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
14 Hb_002374_260 0.0808580195 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
15 Hb_009112_010 0.0836022681 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
16 Hb_008556_030 0.0838253264 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
17 Hb_000101_380 0.0874660744 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
18 Hb_000152_260 0.0875584498 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
19 Hb_001005_030 0.0875821587 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
20 Hb_001405_190 0.0880596973 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_011310_130 Hb_011310_130 Hb_002942_050 Hb_002942_050 Hb_011310_130--Hb_002942_050 Hb_003549_090 Hb_003549_090 Hb_011310_130--Hb_003549_090 Hb_001635_040 Hb_001635_040 Hb_011310_130--Hb_001635_040 Hb_000777_050 Hb_000777_050 Hb_011310_130--Hb_000777_050 Hb_001163_120 Hb_001163_120 Hb_011310_130--Hb_001163_120 Hb_011310_210 Hb_011310_210 Hb_011310_130--Hb_011310_210 Hb_002942_050--Hb_000777_050 Hb_003680_230 Hb_003680_230 Hb_002942_050--Hb_003680_230 Hb_002942_050--Hb_011310_210 Hb_002942_050--Hb_003549_090 Hb_001143_180 Hb_001143_180 Hb_002942_050--Hb_001143_180 Hb_002398_030 Hb_002398_030 Hb_003549_090--Hb_002398_030 Hb_003549_090--Hb_000777_050 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_003549_090--Hb_011310_210 Hb_058999_030 Hb_058999_030 Hb_003549_090--Hb_058999_030 Hb_001751_140 Hb_001751_140 Hb_001635_040--Hb_001751_140 Hb_000162_030 Hb_000162_030 Hb_001635_040--Hb_000162_030 Hb_008568_020 Hb_008568_020 Hb_001635_040--Hb_008568_020 Hb_001005_030 Hb_001005_030 Hb_001635_040--Hb_001005_030 Hb_001635_040--Hb_000777_050 Hb_138596_010 Hb_138596_010 Hb_001635_040--Hb_138596_010 Hb_002684_040 Hb_002684_040 Hb_000777_050--Hb_002684_040 Hb_000777_050--Hb_011310_210 Hb_028308_010 Hb_028308_010 Hb_000777_050--Hb_028308_010 Hb_000031_280 Hb_000031_280 Hb_001163_120--Hb_000031_280 Hb_008556_030 Hb_008556_030 Hb_001163_120--Hb_008556_030 Hb_001163_120--Hb_002942_050 Hb_011609_170 Hb_011609_170 Hb_001163_120--Hb_011609_170 Hb_012404_070 Hb_012404_070 Hb_001163_120--Hb_012404_070 Hb_008120_030 Hb_008120_030 Hb_011310_210--Hb_008120_030 Hb_000309_040 Hb_000309_040 Hb_011310_210--Hb_000309_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.6187 19.8701 27.0868 18.0811 24.3221 32.771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.74279 11.9204 13.8483 14.1966 13.6205

CAGE analysis