Hb_011310_210

Information

Type -
Description -
Location Contig11310: 119386-123724
Sequence    

Annotation

kegg
ID rcu:RCOM_0923990
description hypothetical protein
nr
ID XP_012076560.1
description PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
swissprot
ID Q84ZT9
description Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana GN=WVD2 PE=2 SV=1
trembl
ID A0A067KBR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07163 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03927: 119315-123695
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_210 0.0 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
2 Hb_008120_030 0.0591134763 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
3 Hb_000777_050 0.060705533 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
4 Hb_003549_090 0.0666814938 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
5 Hb_002942_050 0.0693103591 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
6 Hb_011310_130 0.069854146 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
7 Hb_000309_040 0.0740375643 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
8 Hb_001635_040 0.0751052243 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
9 Hb_000680_090 0.0768890937 - - Protein SEY1, putative [Ricinus communis]
10 Hb_000084_250 0.0773792773 - - nucleolar phosphoprotein, putative [Ricinus communis]
11 Hb_002078_110 0.0790357543 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
12 Hb_057878_010 0.0792681682 - - hypothetical protein VITISV_036304 [Vitis vinifera]
13 Hb_001051_080 0.0816443274 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
14 Hb_002398_030 0.0844921913 - - amino acid binding protein, putative [Ricinus communis]
15 Hb_003609_030 0.0854133857 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
16 Hb_004357_020 0.0857595867 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
17 Hb_001926_030 0.0858516153 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
18 Hb_138596_010 0.0864568755 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
19 Hb_001143_180 0.0871044858 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
20 Hb_000162_280 0.0872434304 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]

Gene co-expression network

sample Hb_011310_210 Hb_011310_210 Hb_008120_030 Hb_008120_030 Hb_011310_210--Hb_008120_030 Hb_000777_050 Hb_000777_050 Hb_011310_210--Hb_000777_050 Hb_003549_090 Hb_003549_090 Hb_011310_210--Hb_003549_090 Hb_002942_050 Hb_002942_050 Hb_011310_210--Hb_002942_050 Hb_011310_130 Hb_011310_130 Hb_011310_210--Hb_011310_130 Hb_000309_040 Hb_000309_040 Hb_011310_210--Hb_000309_040 Hb_002398_030 Hb_002398_030 Hb_008120_030--Hb_002398_030 Hb_001635_160 Hb_001635_160 Hb_008120_030--Hb_001635_160 Hb_008120_030--Hb_000777_050 Hb_008120_030--Hb_003549_090 Hb_000345_380 Hb_000345_380 Hb_008120_030--Hb_000345_380 Hb_002684_040 Hb_002684_040 Hb_000777_050--Hb_002684_040 Hb_000777_050--Hb_003549_090 Hb_028308_010 Hb_028308_010 Hb_000777_050--Hb_028308_010 Hb_001635_040 Hb_001635_040 Hb_000777_050--Hb_001635_040 Hb_000777_050--Hb_002942_050 Hb_003549_090--Hb_002398_030 Hb_003549_090--Hb_011310_130 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_058999_030 Hb_058999_030 Hb_003549_090--Hb_058999_030 Hb_002942_050--Hb_011310_130 Hb_003680_230 Hb_003680_230 Hb_002942_050--Hb_003680_230 Hb_002942_050--Hb_003549_090 Hb_001143_180 Hb_001143_180 Hb_002942_050--Hb_001143_180 Hb_011310_130--Hb_001635_040 Hb_011310_130--Hb_000777_050 Hb_001163_120 Hb_001163_120 Hb_011310_130--Hb_001163_120 Hb_002078_110 Hb_002078_110 Hb_000309_040--Hb_002078_110 Hb_001051_080 Hb_001051_080 Hb_000309_040--Hb_001051_080 Hb_000076_160 Hb_000076_160 Hb_000309_040--Hb_000076_160 Hb_001751_140 Hb_001751_140 Hb_000309_040--Hb_001751_140 Hb_138596_010 Hb_138596_010 Hb_000309_040--Hb_138596_010 Hb_002835_230 Hb_002835_230 Hb_000309_040--Hb_002835_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.6427 56.9221 56.9296 52.3985 58.554 91.2067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.9264 37.7399 48.7566 34.6134 29.8201

CAGE analysis