Hb_011311_010

Information

Type -
Description -
Location Contig11311: 14354-14761
Sequence    

Annotation

kegg
ID tcc:TCM_002020
description Ribosomal L27e protein family
nr
ID ADR71246.1
description 60S ribosomal protein L27C [Hevea brasiliensis]
swissprot
ID P51419
description 60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2
trembl
ID I3NMK9
description 60S ribosomal protein L27 OS=Hevea brasiliensis GN=RPL27C PE=2 SV=1
Gene Ontology
ID GO:0022625
description 60s ribosomal protein l27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03928: 14285-15044
cDNA
(Sanger)
(ID:Location)		 005_L10.ab1: 14295-14984 , 012_M22.ab1: 14285-14955 , 018_O16.ab1: 14295-14948 , 023_B18.ab1: 14316-14979 , 032_F05.ab1: 14300-14594 , 034_B05.ab1: 14285-14963 , 036_K04.ab1: 14303-14988

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011311_010 0.0 - - 60S ribosomal protein L27C [Hevea brasiliensis]
2 Hb_002660_030 0.0624149614 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002588_010 0.0644223644 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
4 Hb_026398_010 0.0685589374 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
5 Hb_007944_040 0.0696417031 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
6 Hb_004724_160 0.070053621 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
7 Hb_002925_030 0.07107536 - - 40S ribosomal protein S16B [Hevea brasiliensis]
8 Hb_005511_160 0.0760136434 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
9 Hb_001248_080 0.0778483983 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
10 Hb_003398_120 0.0780194708 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
11 Hb_001863_090 0.0784910192 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
12 Hb_172221_010 0.0799307947 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
13 Hb_003226_210 0.0805779351 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
14 Hb_001269_270 0.0809707523 - - 60S ribosomal protein L27B [Hevea brasiliensis]
15 Hb_000331_700 0.0815465068 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
16 Hb_002713_070 0.0820140061 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
17 Hb_000363_480 0.0831470768 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
18 Hb_002811_080 0.0864630789 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
19 Hb_002835_320 0.0869363047 - - 60S ribosomal protein L27B [Hevea brasiliensis]
20 Hb_000111_340 0.0884462028 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]

Gene co-expression network

sample Hb_011311_010 Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_011311_010--Hb_002660_030 Hb_002588_010 Hb_002588_010 Hb_011311_010--Hb_002588_010 Hb_026398_010 Hb_026398_010 Hb_011311_010--Hb_026398_010 Hb_007944_040 Hb_007944_040 Hb_011311_010--Hb_007944_040 Hb_004724_160 Hb_004724_160 Hb_011311_010--Hb_004724_160 Hb_002925_030 Hb_002925_030 Hb_011311_010--Hb_002925_030 Hb_002713_070 Hb_002713_070 Hb_002660_030--Hb_002713_070 Hb_003226_210 Hb_003226_210 Hb_002660_030--Hb_003226_210 Hb_000134_070 Hb_000134_070 Hb_002660_030--Hb_000134_070 Hb_002660_030--Hb_026398_010 Hb_002660_030--Hb_002925_030 Hb_000042_260 Hb_000042_260 Hb_002588_010--Hb_000042_260 Hb_000093_110 Hb_000093_110 Hb_002588_010--Hb_000093_110 Hb_019516_100 Hb_019516_100 Hb_002588_010--Hb_019516_100 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340 Hb_172221_010 Hb_172221_010 Hb_026398_010--Hb_172221_010 Hb_000329_020 Hb_000329_020 Hb_026398_010--Hb_000329_020 Hb_026398_010--Hb_000042_260 Hb_026398_010--Hb_002588_010 Hb_007944_040--Hb_000111_340 Hb_001268_140 Hb_001268_140 Hb_007944_040--Hb_001268_140 Hb_007575_070 Hb_007575_070 Hb_007944_040--Hb_007575_070 Hb_001300_270 Hb_001300_270 Hb_007944_040--Hb_001300_270 Hb_001248_080 Hb_001248_080 Hb_004724_160--Hb_001248_080 Hb_001269_270 Hb_001269_270 Hb_004724_160--Hb_001269_270 Hb_004724_160--Hb_001268_140 Hb_148930_010 Hb_148930_010 Hb_004724_160--Hb_148930_010 Hb_001045_080 Hb_001045_080 Hb_004724_160--Hb_001045_080 Hb_003398_120 Hb_003398_120 Hb_002925_030--Hb_003398_120 Hb_001998_050 Hb_001998_050 Hb_002925_030--Hb_001998_050 Hb_000227_230 Hb_000227_230 Hb_002925_030--Hb_000227_230 Hb_001863_090 Hb_001863_090 Hb_002925_030--Hb_001863_090 Hb_002925_030--Hb_002713_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
334.182 182.351 206.212 211.649 278.014 412.557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
708.107 1618.52 539.044 325.521 102.667

CAGE analysis