Hb_011311_020

Information

Type -
Description -
Location Contig11311: 21370-30561
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02020g
description POPTRDRAFT_808313; hypothetical protein
nr
ID XP_012081037.1
description PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KF03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16678 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03929: 21491-27821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011311_020 0.0 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
2 Hb_000330_040 0.1052447921 - - PREDICTED: protein RER1B-like [Jatropha curcas]
3 Hb_009701_010 0.1089304739 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
4 Hb_073562_010 0.109265183 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
5 Hb_000987_140 0.1122549665 - - PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]
6 Hb_010874_020 0.1145172008 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]
7 Hb_168697_010 0.1172979981 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
8 Hb_002636_180 0.1205858306 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
9 Hb_002110_030 0.1213716032 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
10 Hb_002276_130 0.1230749072 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
11 Hb_003020_050 0.1239934318 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_001894_120 0.124088839 - - nucleoredoxin, putative [Ricinus communis]
13 Hb_002007_240 0.1247505871 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
14 Hb_000418_070 0.12621623 - - auxin:hydrogen symporter, putative [Ricinus communis]
15 Hb_007307_030 0.1267937977 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
16 Hb_013394_080 0.1304085807 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X2 [Jatropha curcas]
17 Hb_001019_180 0.131238692 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
18 Hb_002701_040 0.131586695 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
19 Hb_000680_050 0.1319024437 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
20 Hb_002890_090 0.1332513564 - - Auxin response factor 1 [Glycine soja]

Gene co-expression network

sample Hb_011311_020 Hb_011311_020 Hb_000330_040 Hb_000330_040 Hb_011311_020--Hb_000330_040 Hb_009701_010 Hb_009701_010 Hb_011311_020--Hb_009701_010 Hb_073562_010 Hb_073562_010 Hb_011311_020--Hb_073562_010 Hb_000987_140 Hb_000987_140 Hb_011311_020--Hb_000987_140 Hb_010874_020 Hb_010874_020 Hb_011311_020--Hb_010874_020 Hb_168697_010 Hb_168697_010 Hb_011311_020--Hb_168697_010 Hb_001019_180 Hb_001019_180 Hb_000330_040--Hb_001019_180 Hb_000330_040--Hb_073562_010 Hb_000976_210 Hb_000976_210 Hb_000330_040--Hb_000976_210 Hb_008775_040 Hb_008775_040 Hb_000330_040--Hb_008775_040 Hb_002636_180 Hb_002636_180 Hb_000330_040--Hb_002636_180 Hb_000345_140 Hb_000345_140 Hb_000330_040--Hb_000345_140 Hb_002007_240 Hb_002007_240 Hb_009701_010--Hb_002007_240 Hb_004705_140 Hb_004705_140 Hb_009701_010--Hb_004705_140 Hb_000227_240 Hb_000227_240 Hb_009701_010--Hb_000227_240 Hb_000853_120 Hb_000853_120 Hb_009701_010--Hb_000853_120 Hb_009564_030 Hb_009564_030 Hb_009701_010--Hb_009564_030 Hb_003020_050 Hb_003020_050 Hb_073562_010--Hb_003020_050 Hb_002110_030 Hb_002110_030 Hb_073562_010--Hb_002110_030 Hb_073562_010--Hb_008775_040 Hb_073562_010--Hb_001019_180 Hb_002701_040 Hb_002701_040 Hb_073562_010--Hb_002701_040 Hb_012573_080 Hb_012573_080 Hb_000987_140--Hb_012573_080 Hb_000836_270 Hb_000836_270 Hb_000987_140--Hb_000836_270 Hb_042038_020 Hb_042038_020 Hb_000987_140--Hb_042038_020 Hb_000418_070 Hb_000418_070 Hb_000987_140--Hb_000418_070 Hb_005914_150 Hb_005914_150 Hb_000987_140--Hb_005914_150 Hb_010874_020--Hb_168697_010 Hb_006938_080 Hb_006938_080 Hb_010874_020--Hb_006938_080 Hb_002276_130 Hb_002276_130 Hb_010874_020--Hb_002276_130 Hb_000000_370 Hb_000000_370 Hb_010874_020--Hb_000000_370 Hb_012490_080 Hb_012490_080 Hb_010874_020--Hb_012490_080 Hb_001617_050 Hb_001617_050 Hb_010874_020--Hb_001617_050 Hb_000140_230 Hb_000140_230 Hb_168697_010--Hb_000140_230 Hb_000680_050 Hb_000680_050 Hb_168697_010--Hb_000680_050 Hb_048219_010 Hb_048219_010 Hb_168697_010--Hb_048219_010 Hb_168697_010--Hb_003020_050 Hb_009486_200 Hb_009486_200 Hb_168697_010--Hb_009486_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.7629 113.656 11.8995 37.1942 71.7631 56.7736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.2577 29.3719 104.079 77.4739 18.7672

CAGE analysis