Hb_011316_020

Information

Type -
Description -
Location Contig11316: 3316-3651
Sequence    

Annotation

kegg
ID pop:POPTR_0015s14220g
description POPTRDRAFT_734053; embryo-specific family protein
nr
ID XP_012090371.1
description PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26201 PE=4 SV=1
Gene Ontology
ID GO:0005730
description embryo-specific family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011316_020 0.0 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
2 Hb_004056_030 0.1399705489 - - hypothetical protein 33 [Hevea brasiliensis]
3 Hb_003117_010 0.159171499 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
4 Hb_092107_010 0.159264419 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001222_050 0.1683868139 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
6 Hb_000260_570 0.1723426209 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000922_390 0.1726430252 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
8 Hb_001073_050 0.1732155808 - - -
9 Hb_001053_150 0.1736027569 - - -
10 Hb_000359_010 0.1785967043 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
11 Hb_064441_010 0.1789589724 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
12 Hb_005188_090 0.1789656356 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
13 Hb_002239_060 0.1792011409 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
14 Hb_001493_180 0.1829631847 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
15 Hb_005060_020 0.1880750458 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
16 Hb_003680_190 0.1884833632 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
17 Hb_001294_010 0.1888308813 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
18 Hb_004079_030 0.1921619829 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
19 Hb_001811_030 0.1940490661 - - Beta-ureidopropionase, putative [Ricinus communis]
20 Hb_002078_480 0.1945474396 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]

Gene co-expression network

sample Hb_011316_020 Hb_011316_020 Hb_004056_030 Hb_004056_030 Hb_011316_020--Hb_004056_030 Hb_003117_010 Hb_003117_010 Hb_011316_020--Hb_003117_010 Hb_092107_010 Hb_092107_010 Hb_011316_020--Hb_092107_010 Hb_001222_050 Hb_001222_050 Hb_011316_020--Hb_001222_050 Hb_000260_570 Hb_000260_570 Hb_011316_020--Hb_000260_570 Hb_000922_390 Hb_000922_390 Hb_011316_020--Hb_000922_390 Hb_114336_020 Hb_114336_020 Hb_004056_030--Hb_114336_020 Hb_004056_030--Hb_092107_010 Hb_001073_050 Hb_001073_050 Hb_004056_030--Hb_001073_050 Hb_004056_030--Hb_000260_570 Hb_064441_010 Hb_064441_010 Hb_004056_030--Hb_064441_010 Hb_006472_050 Hb_006472_050 Hb_004056_030--Hb_006472_050 Hb_027751_060 Hb_027751_060 Hb_003117_010--Hb_027751_060 Hb_003294_100 Hb_003294_100 Hb_003117_010--Hb_003294_100 Hb_013893_010 Hb_013893_010 Hb_003117_010--Hb_013893_010 Hb_003117_010--Hb_092107_010 Hb_001294_010 Hb_001294_010 Hb_003117_010--Hb_001294_010 Hb_002078_480 Hb_002078_480 Hb_003117_010--Hb_002078_480 Hb_001014_230 Hb_001014_230 Hb_092107_010--Hb_001014_230 Hb_092107_010--Hb_001294_010 Hb_092107_010--Hb_114336_020 Hb_092107_010--Hb_000260_570 Hb_002182_030 Hb_002182_030 Hb_092107_010--Hb_002182_030 Hb_005224_010 Hb_005224_010 Hb_001222_050--Hb_005224_010 Hb_001222_050--Hb_000922_390 Hb_000010_410 Hb_000010_410 Hb_001222_050--Hb_000010_410 Hb_003333_050 Hb_003333_050 Hb_001222_050--Hb_003333_050 Hb_000599_350 Hb_000599_350 Hb_001222_050--Hb_000599_350 Hb_005162_070 Hb_005162_070 Hb_000260_570--Hb_005162_070 Hb_001493_180 Hb_001493_180 Hb_000260_570--Hb_001493_180 Hb_001090_050 Hb_001090_050 Hb_000260_570--Hb_001090_050 Hb_002027_040 Hb_002027_040 Hb_000260_570--Hb_002027_040 Hb_010608_050 Hb_010608_050 Hb_000260_570--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_000260_570--Hb_000617_150 Hb_011671_450 Hb_011671_450 Hb_000922_390--Hb_011671_450 Hb_001811_030 Hb_001811_030 Hb_000922_390--Hb_001811_030 Hb_093458_050 Hb_093458_050 Hb_000922_390--Hb_093458_050 Hb_009193_030 Hb_009193_030 Hb_000922_390--Hb_009193_030 Hb_002600_040 Hb_002600_040 Hb_000922_390--Hb_002600_040 Hb_000820_090 Hb_000820_090 Hb_000922_390--Hb_000820_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.47727 1.26388 3.8486 17.6314 11.3158 17.1377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5832 23.3804 70.1865 18.5132 18.0516

CAGE analysis