Hb_011316_030

Information

Type -
Description -
Location Contig11316: 6646-13420
Sequence    

Annotation

kegg
ID rcu:RCOM_1498590
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012090372.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
swissprot
ID Q41382
description DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1
trembl
ID A0A067JS50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26200 PE=3 SV=1
Gene Ontology
ID GO:0005634
description dead-box atp-dependent rna helicase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03933: 6644-13503 , PASA_asmbl_03934: 6671-13503
cDNA
(Sanger)
(ID:Location)		 025_D16.ab1: 6644-9042 , 029_D02.ab1: 6655-7270 , 041_B03.ab1: 6644-8808

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011316_030 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
2 Hb_003777_220 0.0663172898 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
3 Hb_000176_140 0.0720196397 - - PREDICTED: bystin [Jatropha curcas]
4 Hb_000491_080 0.0746254643 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
5 Hb_000179_250 0.0756463951 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
6 Hb_001776_080 0.0784762454 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
7 Hb_127979_010 0.079191033 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
8 Hb_001433_170 0.0809503518 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
9 Hb_003734_130 0.083531913 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
10 Hb_160818_010 0.0879374012 - - -
11 Hb_011609_190 0.0905362471 - - 14-3-3 protein 2 [Hevea brasiliensis]
12 Hb_002377_050 0.0924922535 - - Agmatine deiminase, putative [Ricinus communis]
13 Hb_005754_020 0.0944000187 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
14 Hb_094437_070 0.0973245832 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
15 Hb_002044_090 0.0992926129 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
16 Hb_003352_050 0.0995585329 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
17 Hb_000085_340 0.1003142702 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
18 Hb_000320_440 0.1017192727 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
19 Hb_002391_110 0.1039852093 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
20 Hb_012654_020 0.1047533003 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011316_030 Hb_011316_030 Hb_003777_220 Hb_003777_220 Hb_011316_030--Hb_003777_220 Hb_000176_140 Hb_000176_140 Hb_011316_030--Hb_000176_140 Hb_000491_080 Hb_000491_080 Hb_011316_030--Hb_000491_080 Hb_000179_250 Hb_000179_250 Hb_011316_030--Hb_000179_250 Hb_001776_080 Hb_001776_080 Hb_011316_030--Hb_001776_080 Hb_127979_010 Hb_127979_010 Hb_011316_030--Hb_127979_010 Hb_003734_130 Hb_003734_130 Hb_003777_220--Hb_003734_130 Hb_000320_440 Hb_000320_440 Hb_003777_220--Hb_000320_440 Hb_003777_220--Hb_000176_140 Hb_000684_180 Hb_000684_180 Hb_003777_220--Hb_000684_180 Hb_012807_120 Hb_012807_120 Hb_003777_220--Hb_012807_120 Hb_000176_140--Hb_127979_010 Hb_000176_140--Hb_000179_250 Hb_000176_140--Hb_001776_080 Hb_002044_090 Hb_002044_090 Hb_000176_140--Hb_002044_090 Hb_002681_140 Hb_002681_140 Hb_000176_140--Hb_002681_140 Hb_160818_010 Hb_160818_010 Hb_000491_080--Hb_160818_010 Hb_000491_080--Hb_001776_080 Hb_002377_050 Hb_002377_050 Hb_000491_080--Hb_002377_050 Hb_002818_040 Hb_002818_040 Hb_000491_080--Hb_002818_040 Hb_006029_010 Hb_006029_010 Hb_000491_080--Hb_006029_010 Hb_001433_170 Hb_001433_170 Hb_000179_250--Hb_001433_170 Hb_000179_250--Hb_002044_090 Hb_011609_190 Hb_011609_190 Hb_000179_250--Hb_011609_190 Hb_000179_250--Hb_001776_080 Hb_001776_080--Hb_000320_440 Hb_001776_080--Hb_160818_010 Hb_002149_040 Hb_002149_040 Hb_001776_080--Hb_002149_040 Hb_127979_010--Hb_001433_170 Hb_000057_060 Hb_000057_060 Hb_127979_010--Hb_000057_060 Hb_002391_110 Hb_002391_110 Hb_127979_010--Hb_002391_110 Hb_026048_090 Hb_026048_090 Hb_127979_010--Hb_026048_090 Hb_003404_030 Hb_003404_030 Hb_127979_010--Hb_003404_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
628.453 77.9185 29.8732 31.5928 578.577 536.664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
396.668 132.8 309.924 110.785 36.4771

CAGE analysis