Hb_011316_040

Information

Type -
Description -
Location Contig11316: 13812-17323
Sequence    

Annotation

kegg
ID rcu:RCOM_1498580
description peptidase, putative
nr
ID XP_002510889.1
description peptidase, putative [Ricinus communis]
swissprot
ID P36163
description Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2
trembl
ID B9R9L4
description Peptidase, putative OS=Ricinus communis GN=RCOM_1498580 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mitochondrial metalloendopeptidase oma1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03933: 6644-13503 , PASA_asmbl_03934: 6671-13503 , PASA_asmbl_03935: 13939-17317 , PASA_asmbl_03936: 15638-16155 , PASA_asmbl_03937: 15218-15392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011316_040 0.0 - - peptidase, putative [Ricinus communis]
2 Hb_001277_330 0.0524933108 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
3 Hb_000236_070 0.0721327472 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006541_030 0.072263075 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
5 Hb_000648_110 0.0722882002 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
6 Hb_000206_210 0.0784680191 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
7 Hb_000928_210 0.079113163 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
8 Hb_000069_110 0.0799802281 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
9 Hb_002687_110 0.0806407949 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
10 Hb_000409_020 0.082943693 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
11 Hb_024185_020 0.0833790875 - - -
12 Hb_001100_060 0.0837032834 - - glycoprotein 3-alpha-l-fucosyltransferase A, putative [Ricinus communis]
13 Hb_009838_080 0.0844477535 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
14 Hb_000754_040 0.0870243771 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
15 Hb_000431_010 0.0870484618 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
16 Hb_112798_030 0.0880298289 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004109_190 0.0886651836 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
18 Hb_004254_120 0.0892242918 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005663_060 0.0894716179 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
20 Hb_003943_040 0.0897434557 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011316_040 Hb_011316_040 Hb_001277_330 Hb_001277_330 Hb_011316_040--Hb_001277_330 Hb_000236_070 Hb_000236_070 Hb_011316_040--Hb_000236_070 Hb_006541_030 Hb_006541_030 Hb_011316_040--Hb_006541_030 Hb_000648_110 Hb_000648_110 Hb_011316_040--Hb_000648_110 Hb_000206_210 Hb_000206_210 Hb_011316_040--Hb_000206_210 Hb_000928_210 Hb_000928_210 Hb_011316_040--Hb_000928_210 Hb_002518_140 Hb_002518_140 Hb_001277_330--Hb_002518_140 Hb_000754_040 Hb_000754_040 Hb_001277_330--Hb_000754_040 Hb_002687_110 Hb_002687_110 Hb_001277_330--Hb_002687_110 Hb_006915_050 Hb_006915_050 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100 Hb_002205_070 Hb_002205_070 Hb_000236_070--Hb_002205_070 Hb_024185_020 Hb_024185_020 Hb_000236_070--Hb_024185_020 Hb_000107_620 Hb_000107_620 Hb_000236_070--Hb_000107_620 Hb_000236_070--Hb_000648_110 Hb_009838_080 Hb_009838_080 Hb_000236_070--Hb_009838_080 Hb_007380_070 Hb_007380_070 Hb_006541_030--Hb_007380_070 Hb_005539_350 Hb_005539_350 Hb_006541_030--Hb_005539_350 Hb_000243_030 Hb_000243_030 Hb_006541_030--Hb_000243_030 Hb_000398_180 Hb_000398_180 Hb_006541_030--Hb_000398_180 Hb_000529_190 Hb_000529_190 Hb_006541_030--Hb_000529_190 Hb_002874_190 Hb_002874_190 Hb_006541_030--Hb_002874_190 Hb_000648_110--Hb_024185_020 Hb_000648_110--Hb_001277_330 Hb_000648_110--Hb_002687_110 Hb_000409_020 Hb_000409_020 Hb_000648_110--Hb_000409_020 Hb_004254_120 Hb_004254_120 Hb_000206_210--Hb_004254_120 Hb_000206_210--Hb_024185_020 Hb_000777_040 Hb_000777_040 Hb_000206_210--Hb_000777_040 Hb_000206_210--Hb_009838_080 Hb_000206_210--Hb_000928_210 Hb_000173_290 Hb_000173_290 Hb_000206_210--Hb_000173_290 Hb_000876_070 Hb_000876_070 Hb_000928_210--Hb_000876_070 Hb_000928_210--Hb_004254_120 Hb_002739_100 Hb_002739_100 Hb_000928_210--Hb_002739_100 Hb_004724_080 Hb_004724_080 Hb_000928_210--Hb_004724_080 Hb_002046_180 Hb_002046_180 Hb_000928_210--Hb_002046_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.9217 9.62031 11.391 17.3212 27.8172 29.5304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.2544 38.331 46.8019 12.0279 21.0442

CAGE analysis