Hb_011316_070

Information

Type -
Description -
Location Contig11316: 25660-27126
Sequence    

Annotation

kegg
ID rcu:RCOM_1498540
description acyltransferase, putative
nr
ID XP_002510885.1
description acyltransferase, putative [Ricinus communis]
swissprot
ID Q9XF43
description 3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=1 SV=1
trembl
ID B9R9L0
description 3-ketoacyl-CoA synthase OS=Ricinus communis GN=RCOM_1498540 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03942: 26761-26954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011316_070 0.0 - - acyltransferase, putative [Ricinus communis]
2 Hb_010916_010 0.2112077143 - - terpene synthase [Populus trichocarpa]
3 Hb_001709_100 0.2284686015 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
4 Hb_001722_090 0.2293011083 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
5 Hb_000009_370 0.2437222965 - - hypothetical protein JCGZ_12284 [Jatropha curcas]
6 Hb_028621_030 0.2490284391 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
7 Hb_008453_120 0.2519471 transcription factor TF Family: bZIP hypothetical protein POPTR_0005s26480g [Populus trichocarpa]
8 Hb_003638_060 0.2567372488 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]
9 Hb_000264_150 0.2589034652 - - PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
10 Hb_004491_020 0.2676542344 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
11 Hb_000429_210 0.2722608351 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
12 Hb_000006_020 0.2740832368 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000015_240 0.2740832368 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000016_090 0.2740832368 - - -
15 Hb_000016_240 0.2740832368 transcription factor TF Family: LOB hypothetical protein POPTR_0012s13910g [Populus trichocarpa]
16 Hb_000028_020 0.2740832368 - - -
17 Hb_000028_300 0.2740832368 - - hypothetical protein 0_13835_01, partial [Pinus radiata]
18 Hb_000031_310 0.2740832368 transcription factor TF Family: Orphans hypothetical protein [Trichormus azollae]
19 Hb_000037_100 0.2740832368 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000045_030 0.2740832368 - - -

Gene co-expression network

sample Hb_011316_070 Hb_011316_070 Hb_010916_010 Hb_010916_010 Hb_011316_070--Hb_010916_010 Hb_001709_100 Hb_001709_100 Hb_011316_070--Hb_001709_100 Hb_001722_090 Hb_001722_090 Hb_011316_070--Hb_001722_090 Hb_000009_370 Hb_000009_370 Hb_011316_070--Hb_000009_370 Hb_028621_030 Hb_028621_030 Hb_011316_070--Hb_028621_030 Hb_008453_120 Hb_008453_120 Hb_011316_070--Hb_008453_120 Hb_003147_020 Hb_003147_020 Hb_010916_010--Hb_003147_020 Hb_149407_010 Hb_149407_010 Hb_010916_010--Hb_149407_010 Hb_162008_030 Hb_162008_030 Hb_010916_010--Hb_162008_030 Hb_007218_010 Hb_007218_010 Hb_010916_010--Hb_007218_010 Hb_029879_040 Hb_029879_040 Hb_010916_010--Hb_029879_040 Hb_000129_060 Hb_000129_060 Hb_010916_010--Hb_000129_060 Hb_001709_100--Hb_001722_090 Hb_000264_150 Hb_000264_150 Hb_001709_100--Hb_000264_150 Hb_004491_020 Hb_004491_020 Hb_001709_100--Hb_004491_020 Hb_001247_340 Hb_001247_340 Hb_001709_100--Hb_001247_340 Hb_162189_010 Hb_162189_010 Hb_001709_100--Hb_162189_010 Hb_007545_040 Hb_007545_040 Hb_001709_100--Hb_007545_040 Hb_001722_090--Hb_000264_150 Hb_001722_090--Hb_004491_020 Hb_001722_090--Hb_001247_340 Hb_001722_090--Hb_162189_010 Hb_001722_090--Hb_007545_040 Hb_000009_370--Hb_028621_030 Hb_000429_210 Hb_000429_210 Hb_000009_370--Hb_000429_210 Hb_003750_100 Hb_003750_100 Hb_000009_370--Hb_003750_100 Hb_180924_010 Hb_180924_010 Hb_000009_370--Hb_180924_010 Hb_000009_370--Hb_008453_120 Hb_028621_030--Hb_000429_210 Hb_028621_030--Hb_003750_100 Hb_028621_030--Hb_180924_010 Hb_028621_030--Hb_008453_120 Hb_136620_010 Hb_136620_010 Hb_008453_120--Hb_136620_010 Hb_000206_080 Hb_000206_080 Hb_008453_120--Hb_000206_080 Hb_001433_120 Hb_001433_120 Hb_008453_120--Hb_001433_120 Hb_008453_120--Hb_007218_010 Hb_003411_080 Hb_003411_080 Hb_008453_120--Hb_003411_080 Hb_008453_120--Hb_010916_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.193018 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0320405 0 0 0 0

CAGE analysis