Hb_011316_100

Information

Type -
Description -
Location Contig11316: 40383-49490
Sequence    

Annotation

kegg
ID gmx:100797004
description exostosin-2-like
nr
ID XP_012090360.1
description PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
swissprot
ID Q9LY62
description Glycosyltransferase family 64 protein C4 OS=Arabidopsis thaliana GN=EPC1 PE=2 SV=1
trembl
ID A0A067JEV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26193 PE=4 SV=1
Gene Ontology
ID GO:0016021
description glycosyltransferase family 64 protein c4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03944: 40348-42316 , PASA_asmbl_03945: 42497-49487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011316_100 0.0 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
2 Hb_000072_070 0.1041412916 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
3 Hb_035273_030 0.1082299829 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
4 Hb_007479_050 0.1088630848 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
5 Hb_002183_070 0.1226518719 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
6 Hb_001053_180 0.1234269865 - - protein binding protein, putative [Ricinus communis]
7 Hb_001328_040 0.1258108161 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
8 Hb_004705_040 0.1277304021 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
9 Hb_000096_090 0.1307812401 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
10 Hb_000317_490 0.1315411291 - - Gibberellin receptor GID1, putative [Ricinus communis]
11 Hb_024682_010 0.1325154437 - - sterol isomerase, putative [Ricinus communis]
12 Hb_005433_040 0.132605574 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
13 Hb_000127_010 0.1330527314 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
14 Hb_002835_240 0.1337338909 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
15 Hb_000189_310 0.1345436358 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
16 Hb_032264_120 0.1355467291 - - hypothetical protein CICLE_v10013128mg [Citrus clementina]
17 Hb_003016_020 0.1371604722 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
18 Hb_000054_100 0.1376486435 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
19 Hb_003732_020 0.1395839126 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
20 Hb_008847_040 0.1396995015 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011316_100 Hb_011316_100 Hb_000072_070 Hb_000072_070 Hb_011316_100--Hb_000072_070 Hb_035273_030 Hb_035273_030 Hb_011316_100--Hb_035273_030 Hb_007479_050 Hb_007479_050 Hb_011316_100--Hb_007479_050 Hb_002183_070 Hb_002183_070 Hb_011316_100--Hb_002183_070 Hb_001053_180 Hb_001053_180 Hb_011316_100--Hb_001053_180 Hb_001328_040 Hb_001328_040 Hb_011316_100--Hb_001328_040 Hb_000189_310 Hb_000189_310 Hb_000072_070--Hb_000189_310 Hb_004007_160 Hb_004007_160 Hb_000072_070--Hb_004007_160 Hb_008062_040 Hb_008062_040 Hb_000072_070--Hb_008062_040 Hb_001085_050 Hb_001085_050 Hb_000072_070--Hb_001085_050 Hb_000575_030 Hb_000575_030 Hb_000072_070--Hb_000575_030 Hb_005433_040 Hb_005433_040 Hb_035273_030--Hb_005433_040 Hb_022181_020 Hb_022181_020 Hb_035273_030--Hb_022181_020 Hb_000069_600 Hb_000069_600 Hb_035273_030--Hb_000069_600 Hb_001983_020 Hb_001983_020 Hb_035273_030--Hb_001983_020 Hb_003732_020 Hb_003732_020 Hb_035273_030--Hb_003732_020 Hb_001100_060 Hb_001100_060 Hb_035273_030--Hb_001100_060 Hb_004705_040 Hb_004705_040 Hb_007479_050--Hb_004705_040 Hb_000554_010 Hb_000554_010 Hb_007479_050--Hb_000554_010 Hb_000307_140 Hb_000307_140 Hb_007479_050--Hb_000307_140 Hb_002518_030 Hb_002518_030 Hb_007479_050--Hb_002518_030 Hb_000170_200 Hb_000170_200 Hb_007479_050--Hb_000170_200 Hb_000046_100 Hb_000046_100 Hb_002183_070--Hb_000046_100 Hb_002374_570 Hb_002374_570 Hb_002183_070--Hb_002374_570 Hb_003994_290 Hb_003994_290 Hb_002183_070--Hb_003994_290 Hb_002016_170 Hb_002016_170 Hb_002183_070--Hb_002016_170 Hb_000317_490 Hb_000317_490 Hb_002183_070--Hb_000317_490 Hb_021596_090 Hb_021596_090 Hb_002183_070--Hb_021596_090 Hb_024682_010 Hb_024682_010 Hb_001053_180--Hb_024682_010 Hb_000096_090 Hb_000096_090 Hb_001053_180--Hb_000096_090 Hb_000127_010 Hb_000127_010 Hb_001053_180--Hb_000127_010 Hb_001031_080 Hb_001031_080 Hb_001053_180--Hb_001031_080 Hb_000345_390 Hb_000345_390 Hb_001053_180--Hb_000345_390 Hb_116349_100 Hb_116349_100 Hb_001053_180--Hb_116349_100 Hb_001662_070 Hb_001662_070 Hb_001328_040--Hb_001662_070 Hb_000815_320 Hb_000815_320 Hb_001328_040--Hb_000815_320 Hb_032264_120 Hb_032264_120 Hb_001328_040--Hb_032264_120 Hb_002811_260 Hb_002811_260 Hb_001328_040--Hb_002811_260 Hb_008847_040 Hb_008847_040 Hb_001328_040--Hb_008847_040 Hb_165132_010 Hb_165132_010 Hb_001328_040--Hb_165132_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3759 1.25173 11.7779 10.1716 7.65649 13.1808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7678 13.9395 12.4771 5.31639 6.66454

CAGE analysis