Hb_011316_110

Information

Type -
Description -
Location Contig11316: 53151-55262
Sequence    

Annotation

kegg
ID pop:POPTR_0015s14080g
description POPTRDRAFT_575727; kinase family protein
nr
ID XP_012090359.1
description PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
swissprot
ID Q9STJ8
description Receptor-like serine/threonine-protein kinase At4g25390 OS=Arabidopsis thaliana GN=At4g25390 PE=2 SV=1
trembl
ID A0A067JEP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26192 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like serine threonine-protein kinase at4g25390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03948: 53201-53329 , PASA_asmbl_03949: 53383-54778
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011316_110 0.0 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
2 Hb_007447_010 0.0660558424 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
3 Hb_001584_110 0.075977735 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
4 Hb_002400_270 0.0847598412 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
5 Hb_000729_050 0.0888263483 - - Pinin, putative [Ricinus communis]
6 Hb_022256_040 0.0924741807 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
7 Hb_000184_110 0.0957781385 - - hypothetical protein F383_18769 [Gossypium arboreum]
8 Hb_001040_170 0.0979972285 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_004440_100 0.0983727244 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
10 Hb_000107_100 0.0999464123 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
11 Hb_000236_250 0.1008040817 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000077_050 0.1013189924 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000977_180 0.1016905103 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
14 Hb_123777_030 0.1018119862 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
15 Hb_000230_330 0.101949809 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
16 Hb_000048_140 0.1025566797 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
17 Hb_007407_040 0.1030647719 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_000078_130 0.1047568336 - - -
19 Hb_002874_070 0.104858781 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
20 Hb_007943_100 0.1065412484 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_011316_110 Hb_011316_110 Hb_007447_010 Hb_007447_010 Hb_011316_110--Hb_007447_010 Hb_001584_110 Hb_001584_110 Hb_011316_110--Hb_001584_110 Hb_002400_270 Hb_002400_270 Hb_011316_110--Hb_002400_270 Hb_000729_050 Hb_000729_050 Hb_011316_110--Hb_000729_050 Hb_022256_040 Hb_022256_040 Hb_011316_110--Hb_022256_040 Hb_000184_110 Hb_000184_110 Hb_011316_110--Hb_000184_110 Hb_000077_050 Hb_000077_050 Hb_007447_010--Hb_000077_050 Hb_000107_100 Hb_000107_100 Hb_007447_010--Hb_000107_100 Hb_007447_010--Hb_022256_040 Hb_001040_170 Hb_001040_170 Hb_007447_010--Hb_001040_170 Hb_007447_010--Hb_001584_110 Hb_000230_330 Hb_000230_330 Hb_001584_110--Hb_000230_330 Hb_002874_070 Hb_002874_070 Hb_001584_110--Hb_002874_070 Hb_014568_030 Hb_014568_030 Hb_001584_110--Hb_014568_030 Hb_011282_030 Hb_011282_030 Hb_001584_110--Hb_011282_030 Hb_000390_060 Hb_000390_060 Hb_001584_110--Hb_000390_060 Hb_000462_150 Hb_000462_150 Hb_001584_110--Hb_000462_150 Hb_000327_240 Hb_000327_240 Hb_002400_270--Hb_000327_240 Hb_000742_250 Hb_000742_250 Hb_002400_270--Hb_000742_250 Hb_002818_040 Hb_002818_040 Hb_002400_270--Hb_002818_040 Hb_000369_060 Hb_000369_060 Hb_002400_270--Hb_000369_060 Hb_001416_040 Hb_001416_040 Hb_002400_270--Hb_001416_040 Hb_000729_050--Hb_000184_110 Hb_007407_040 Hb_007407_040 Hb_000729_050--Hb_007407_040 Hb_004452_100 Hb_004452_100 Hb_000729_050--Hb_004452_100 Hb_003001_150 Hb_003001_150 Hb_000729_050--Hb_003001_150 Hb_008143_030 Hb_008143_030 Hb_000729_050--Hb_008143_030 Hb_002997_100 Hb_002997_100 Hb_022256_040--Hb_002997_100 Hb_022256_040--Hb_002874_070 Hb_002631_050 Hb_002631_050 Hb_022256_040--Hb_002631_050 Hb_000733_060 Hb_000733_060 Hb_022256_040--Hb_000733_060 Hb_022256_040--Hb_000230_330 Hb_022256_040--Hb_001584_110 Hb_001017_040 Hb_001017_040 Hb_000184_110--Hb_001017_040 Hb_005396_130 Hb_005396_130 Hb_000184_110--Hb_005396_130 Hb_000184_110--Hb_004452_100 Hb_005662_030 Hb_005662_030 Hb_000184_110--Hb_005662_030 Hb_108216_040 Hb_108216_040 Hb_000184_110--Hb_108216_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7452 5.71422 3.52071 6.25833 34.4219 28.8495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8539 7.90817 19.2722 7.91146 9.20105

CAGE analysis