Hb_011330_020

Information

Type transcription factor
Description TF Family: ARID
Location Contig11330: 94576-98758
Sequence    

Annotation

kegg
ID rcu:RCOM_0302130
description transcription factor, putative
nr
ID XP_002531766.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9LTT3
description High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10 PE=2 SV=1
trembl
ID B9T0J7
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0302130 PE=4 SV=1
Gene Ontology
ID GO:0003677
description high mobility group b protein 10-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03983: 95147-95339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011330_020 0.0 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
2 Hb_000110_250 0.0818447926 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
3 Hb_001056_030 0.0881202513 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]
4 Hb_004709_010 0.0934659966 - - hypothetical protein B456_007G097300 [Gossypium raimondii]
5 Hb_000599_260 0.0953799385 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
6 Hb_007827_010 0.1012535892 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
7 Hb_000160_180 0.1062815352 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
8 Hb_000359_150 0.1073605318 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
9 Hb_001279_080 0.1110189321 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
10 Hb_001377_450 0.1110908185 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
11 Hb_131181_010 0.1164684529 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
12 Hb_087749_010 0.1179585474 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
13 Hb_000431_070 0.1196287072 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
14 Hb_000877_080 0.1198767044 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
15 Hb_003848_040 0.1209506317 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
16 Hb_001472_100 0.121125222 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
17 Hb_017987_030 0.1225689433 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]
18 Hb_000429_040 0.1225996804 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
19 Hb_001318_260 0.1242950685 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
20 Hb_002686_110 0.1250225906 - - -

Gene co-expression network

sample Hb_011330_020 Hb_011330_020 Hb_000110_250 Hb_000110_250 Hb_011330_020--Hb_000110_250 Hb_001056_030 Hb_001056_030 Hb_011330_020--Hb_001056_030 Hb_004709_010 Hb_004709_010 Hb_011330_020--Hb_004709_010 Hb_000599_260 Hb_000599_260 Hb_011330_020--Hb_000599_260 Hb_007827_010 Hb_007827_010 Hb_011330_020--Hb_007827_010 Hb_000160_180 Hb_000160_180 Hb_011330_020--Hb_000160_180 Hb_000069_720 Hb_000069_720 Hb_000110_250--Hb_000069_720 Hb_003678_020 Hb_003678_020 Hb_000110_250--Hb_003678_020 Hb_189216_020 Hb_189216_020 Hb_000110_250--Hb_189216_020 Hb_007894_060 Hb_007894_060 Hb_000110_250--Hb_007894_060 Hb_000110_250--Hb_007827_010 Hb_000877_080 Hb_000877_080 Hb_001056_030--Hb_000877_080 Hb_000429_040 Hb_000429_040 Hb_001056_030--Hb_000429_040 Hb_000394_180 Hb_000394_180 Hb_001056_030--Hb_000394_180 Hb_002972_010 Hb_002972_010 Hb_001056_030--Hb_002972_010 Hb_000413_240 Hb_000413_240 Hb_001056_030--Hb_000413_240 Hb_002686_110 Hb_002686_110 Hb_004709_010--Hb_002686_110 Hb_005667_040 Hb_005667_040 Hb_004709_010--Hb_005667_040 Hb_014720_040 Hb_014720_040 Hb_004709_010--Hb_014720_040 Hb_087749_010 Hb_087749_010 Hb_004709_010--Hb_087749_010 Hb_000676_140 Hb_000676_140 Hb_004709_010--Hb_000676_140 Hb_001931_010 Hb_001931_010 Hb_000599_260--Hb_001931_010 Hb_002307_180 Hb_002307_180 Hb_000599_260--Hb_002307_180 Hb_002171_060 Hb_002171_060 Hb_000599_260--Hb_002171_060 Hb_000505_130 Hb_000505_130 Hb_000599_260--Hb_000505_130 Hb_001472_100 Hb_001472_100 Hb_000599_260--Hb_001472_100 Hb_012565_070 Hb_012565_070 Hb_000599_260--Hb_012565_070 Hb_002609_200 Hb_002609_200 Hb_007827_010--Hb_002609_200 Hb_001279_080 Hb_001279_080 Hb_007827_010--Hb_001279_080 Hb_002872_050 Hb_002872_050 Hb_007827_010--Hb_002872_050 Hb_000107_150 Hb_000107_150 Hb_007827_010--Hb_000107_150 Hb_000431_070 Hb_000431_070 Hb_007827_010--Hb_000431_070 Hb_000035_270 Hb_000035_270 Hb_007827_010--Hb_000035_270 Hb_131181_010 Hb_131181_010 Hb_000160_180--Hb_131181_010 Hb_002540_080 Hb_002540_080 Hb_000160_180--Hb_002540_080 Hb_001318_260 Hb_001318_260 Hb_000160_180--Hb_001318_260 Hb_018133_020 Hb_018133_020 Hb_000160_180--Hb_018133_020 Hb_000160_180--Hb_001279_080 Hb_026053_020 Hb_026053_020 Hb_000160_180--Hb_026053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.803555 0.413483 1.71485 1.50501 0.527517 1.22343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.98366 2.58515 0.570705 0.736594 1.35846

CAGE analysis