Hb_011344_040

Information

Type -
Description -
Location Contig11344: 16771-22205
Sequence    

Annotation

kegg
ID rcu:RCOM_1679720
description 21 kDa protein precursor, putative
nr
ID XP_012087122.1
description PREDICTED: 21 kDa protein [Jatropha curcas]
swissprot
ID Q9LUL8
description Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1
trembl
ID A0A0D3BFT6
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 006_N24.ab1: 16679-17436

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_040 0.0 - - PREDICTED: 21 kDa protein [Jatropha curcas]
2 Hb_185608_010 0.0559960915 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
3 Hb_010193_020 0.0687703717 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
4 Hb_000227_360 0.0693257922 - - PREDICTED: mavicyanin [Jatropha curcas]
5 Hb_003858_010 0.0707603096 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
6 Hb_001357_290 0.0729595039 - - PREDICTED: uncharacterized protein LOC105632986 [Jatropha curcas]
7 Hb_057862_010 0.0731154367 - - protein binding protein, putative [Ricinus communis]
8 Hb_005269_060 0.0746196765 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
9 Hb_000130_250 0.0758238713 - - PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]
10 Hb_049955_010 0.078582985 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
11 Hb_142204_010 0.0795863899 - - pyruvate decarboxylase [Saccharum officinarum]
12 Hb_061700_010 0.0856284329 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
13 Hb_000343_070 0.0867055341 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
14 Hb_005440_040 0.087193864 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
15 Hb_108090_010 0.0872041816 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007382_110 0.0875115725 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
17 Hb_000531_030 0.0880205697 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010172_040 0.0942538782 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
19 Hb_162450_010 0.0953629752 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
20 Hb_001456_030 0.0964088079 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]

Gene co-expression network

sample Hb_011344_040 Hb_011344_040 Hb_185608_010 Hb_185608_010 Hb_011344_040--Hb_185608_010 Hb_010193_020 Hb_010193_020 Hb_011344_040--Hb_010193_020 Hb_000227_360 Hb_000227_360 Hb_011344_040--Hb_000227_360 Hb_003858_010 Hb_003858_010 Hb_011344_040--Hb_003858_010 Hb_001357_290 Hb_001357_290 Hb_011344_040--Hb_001357_290 Hb_057862_010 Hb_057862_010 Hb_011344_040--Hb_057862_010 Hb_185608_010--Hb_057862_010 Hb_162450_010 Hb_162450_010 Hb_185608_010--Hb_162450_010 Hb_049955_010 Hb_049955_010 Hb_185608_010--Hb_049955_010 Hb_007382_110 Hb_007382_110 Hb_185608_010--Hb_007382_110 Hb_185608_010--Hb_003858_010 Hb_011709_010 Hb_011709_010 Hb_010193_020--Hb_011709_010 Hb_010193_020--Hb_185608_010 Hb_010193_020--Hb_057862_010 Hb_010193_020--Hb_049955_010 Hb_005269_060 Hb_005269_060 Hb_010193_020--Hb_005269_060 Hb_108090_010 Hb_108090_010 Hb_000227_360--Hb_108090_010 Hb_005440_040 Hb_005440_040 Hb_000227_360--Hb_005440_040 Hb_000227_360--Hb_003858_010 Hb_001456_030 Hb_001456_030 Hb_000227_360--Hb_001456_030 Hb_000227_360--Hb_001357_290 Hb_181908_010 Hb_181908_010 Hb_003858_010--Hb_181908_010 Hb_008008_040 Hb_008008_040 Hb_003858_010--Hb_008008_040 Hb_001454_420 Hb_001454_420 Hb_003858_010--Hb_001454_420 Hb_142204_010 Hb_142204_010 Hb_003858_010--Hb_142204_010 Hb_000130_250 Hb_000130_250 Hb_001357_290--Hb_000130_250 Hb_000347_060 Hb_000347_060 Hb_001357_290--Hb_000347_060 Hb_061700_010 Hb_061700_010 Hb_001357_290--Hb_061700_010 Hb_000392_350 Hb_000392_350 Hb_001357_290--Hb_000392_350 Hb_057862_010--Hb_162450_010 Hb_057862_010--Hb_049955_010 Hb_002740_140 Hb_002740_140 Hb_057862_010--Hb_002740_140 Hb_093084_030 Hb_093084_030 Hb_057862_010--Hb_093084_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0507376 2.63154 107.475 551.461 0.015844 0.641647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.386072 0.0303699 0.0566136 6.92933 286.94

CAGE analysis