Hb_011344_080

Information

Type -
Description -
Location Contig11344: 46511-50757
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_080 0.0 - - -
2 Hb_013394_010 0.0122478691 - - PREDICTED: laccase-14-like [Malus domestica]
3 Hb_005800_040 0.1140911351 - - -
4 Hb_001251_030 0.1289027494 - - hypothetical protein PHAVU_002G189800g [Phaseolus vulgaris]
5 Hb_108854_010 0.1986719747 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
6 Hb_000594_170 0.203688157 - - -
7 Hb_008071_030 0.2081572315 - - -
8 Hb_006156_020 0.2472473319 - - -
9 Hb_052761_010 0.2529607332 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
10 Hb_000739_090 0.2801051471 - - -
11 Hb_103452_020 0.3141611852 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
12 Hb_004466_010 0.3268922331 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
13 Hb_185326_010 0.3314652196 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008891_010 0.3493233247 - - hypothetical protein EUGRSUZ_D01145 [Eucalyptus grandis]
15 Hb_000395_100 0.3588407906 - - Protein MYG1, putative [Ricinus communis]
16 Hb_000908_010 0.383188392 - - Disease resistance protein RGA2, putative [Ricinus communis]
17 Hb_008983_060 0.3946163813 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
18 Hb_000375_380 0.3988135181 - - -
19 Hb_011978_010 0.3988137297 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
20 Hb_000100_050 0.3988150131 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_011344_080 Hb_011344_080 Hb_013394_010 Hb_013394_010 Hb_011344_080--Hb_013394_010 Hb_005800_040 Hb_005800_040 Hb_011344_080--Hb_005800_040 Hb_001251_030 Hb_001251_030 Hb_011344_080--Hb_001251_030 Hb_108854_010 Hb_108854_010 Hb_011344_080--Hb_108854_010 Hb_000594_170 Hb_000594_170 Hb_011344_080--Hb_000594_170 Hb_008071_030 Hb_008071_030 Hb_011344_080--Hb_008071_030 Hb_013394_010--Hb_005800_040 Hb_013394_010--Hb_001251_030 Hb_013394_010--Hb_108854_010 Hb_013394_010--Hb_008071_030 Hb_013394_010--Hb_000594_170 Hb_005800_040--Hb_001251_030 Hb_052761_010 Hb_052761_010 Hb_005800_040--Hb_052761_010 Hb_000739_090 Hb_000739_090 Hb_005800_040--Hb_000739_090 Hb_006156_020 Hb_006156_020 Hb_005800_040--Hb_006156_020 Hb_001251_030--Hb_052761_010 Hb_001251_030--Hb_000739_090 Hb_001251_030--Hb_006156_020 Hb_108854_010--Hb_000594_170 Hb_108854_010--Hb_005800_040 Hb_108854_010--Hb_001251_030 Hb_108854_010--Hb_052761_010 Hb_000594_170--Hb_008071_030 Hb_000908_010 Hb_000908_010 Hb_000594_170--Hb_000908_010 Hb_000594_170--Hb_005800_040 Hb_004466_010 Hb_004466_010 Hb_008071_030--Hb_004466_010 Hb_008071_030--Hb_005800_040 Hb_008071_030--Hb_001251_030 Hb_001948_010 Hb_001948_010 Hb_008071_030--Hb_001948_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0618534 0 0 0 0.0582108 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0476312 0

CAGE analysis