Hb_011344_090

Information

Type -
Description -
Location Contig11344: 50666-58520
Sequence    

Annotation

kegg
ID mus:103983029
description FAM10 family protein At4g22670-like
nr
ID XP_012087117.1
description PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
swissprot
ID Q93YR3
description FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1
trembl
ID A0A067JRZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20769 PE=4 SV=1
Gene Ontology
ID GO:0005829
description fam10 family protein at4g22670-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04001: 50741-57669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_090 0.0 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
2 Hb_001427_190 0.0916644215 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
3 Hb_011930_080 0.0996826439 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
4 Hb_002888_070 0.1037717655 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
5 Hb_000333_060 0.1039297373 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
6 Hb_001935_110 0.1044742357 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
7 Hb_000086_560 0.1048060514 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
8 Hb_004096_070 0.10591115 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
9 Hb_002918_060 0.1073749732 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
10 Hb_006658_040 0.1087066517 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
11 Hb_001541_080 0.109241353 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000317_250 0.1093231708 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
13 Hb_001454_370 0.1110493391 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
14 Hb_002157_050 0.1124671142 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
15 Hb_002078_100 0.1132239392 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
16 Hb_005333_160 0.1146218172 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
17 Hb_001102_080 0.1148662174 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
18 Hb_000923_080 0.1160469813 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
19 Hb_001369_040 0.1170401709 - - PREDICTED: probable isoaspartyl peptidase/L-asparaginase 3 isoform X1 [Jatropha curcas]
20 Hb_010053_030 0.1172141398 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_011344_090 Hb_011344_090 Hb_001427_190 Hb_001427_190 Hb_011344_090--Hb_001427_190 Hb_011930_080 Hb_011930_080 Hb_011344_090--Hb_011930_080 Hb_002888_070 Hb_002888_070 Hb_011344_090--Hb_002888_070 Hb_000333_060 Hb_000333_060 Hb_011344_090--Hb_000333_060 Hb_001935_110 Hb_001935_110 Hb_011344_090--Hb_001935_110 Hb_000086_560 Hb_000086_560 Hb_011344_090--Hb_000086_560 Hb_001427_190--Hb_011930_080 Hb_001427_190--Hb_001935_110 Hb_000152_260 Hb_000152_260 Hb_001427_190--Hb_000152_260 Hb_019654_040 Hb_019654_040 Hb_001427_190--Hb_019654_040 Hb_002078_100 Hb_002078_100 Hb_001427_190--Hb_002078_100 Hb_001427_190--Hb_002888_070 Hb_002374_320 Hb_002374_320 Hb_011930_080--Hb_002374_320 Hb_011930_080--Hb_019654_040 Hb_000648_100 Hb_000648_100 Hb_011930_080--Hb_000648_100 Hb_011930_080--Hb_002078_100 Hb_011930_080--Hb_002888_070 Hb_000868_060 Hb_000868_060 Hb_002888_070--Hb_000868_060 Hb_003126_100 Hb_003126_100 Hb_002888_070--Hb_003126_100 Hb_000480_010 Hb_000480_010 Hb_002888_070--Hb_000480_010 Hb_000914_080 Hb_000914_080 Hb_002888_070--Hb_000914_080 Hb_001102_080 Hb_001102_080 Hb_002888_070--Hb_001102_080 Hb_000333_060--Hb_001935_110 Hb_028308_010 Hb_028308_010 Hb_000333_060--Hb_028308_010 Hb_000109_210 Hb_000109_210 Hb_000333_060--Hb_000109_210 Hb_002684_040 Hb_002684_040 Hb_000333_060--Hb_002684_040 Hb_000333_060--Hb_002078_100 Hb_007632_240 Hb_007632_240 Hb_000333_060--Hb_007632_240 Hb_012053_080 Hb_012053_080 Hb_001935_110--Hb_012053_080 Hb_001935_110--Hb_019654_040 Hb_000470_070 Hb_000470_070 Hb_001935_110--Hb_000470_070 Hb_001935_110--Hb_002078_100 Hb_005333_160 Hb_005333_160 Hb_000086_560--Hb_005333_160 Hb_000086_560--Hb_011930_080 Hb_171900_070 Hb_171900_070 Hb_000086_560--Hb_171900_070 Hb_000086_560--Hb_001427_190 Hb_005053_010 Hb_005053_010 Hb_000086_560--Hb_005053_010 Hb_002374_260 Hb_002374_260 Hb_000086_560--Hb_002374_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.9629 36.8028 59.581 24.1078 83.2192 71.0372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.5357 16.1526 20.0247 80.0359 26.5168

CAGE analysis