Hb_011344_120

Information

Type -
Description -
Location Contig11344: 106239-109015
Sequence    

Annotation

kegg
ID rcu:RCOM_1679900
description hypothetical protein
nr
ID XP_012087114.1
description PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20767 PE=4 SV=1
Gene Ontology
ID GO:0005507
description micos complex subunit mic25a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04004: 106156-108221 , PASA_asmbl_04005: 107358-108698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_120 0.0 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
2 Hb_007928_030 0.0632534732 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
3 Hb_005914_170 0.0665605688 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
4 Hb_001189_070 0.0696356857 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
5 Hb_009787_030 0.0757014788 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
6 Hb_004108_220 0.0801733333 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
7 Hb_000347_240 0.0805460484 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
8 Hb_000431_170 0.080617795 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
9 Hb_000948_160 0.081065509 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
10 Hb_000210_120 0.0821973542 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
11 Hb_031862_100 0.0822595334 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002042_150 0.0824057811 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
13 Hb_001215_040 0.0835236174 - - conserved hypothetical protein [Ricinus communis]
14 Hb_089032_030 0.0846697979 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
15 Hb_000310_090 0.0852505024 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
16 Hb_000312_080 0.0853087033 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
17 Hb_000081_160 0.0855588946 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
18 Hb_001427_160 0.0857413265 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_004109_340 0.0862705896 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
20 Hb_000390_300 0.0877549637 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]

Gene co-expression network

sample Hb_011344_120 Hb_011344_120 Hb_007928_030 Hb_007928_030 Hb_011344_120--Hb_007928_030 Hb_005914_170 Hb_005914_170 Hb_011344_120--Hb_005914_170 Hb_001189_070 Hb_001189_070 Hb_011344_120--Hb_001189_070 Hb_009787_030 Hb_009787_030 Hb_011344_120--Hb_009787_030 Hb_004108_220 Hb_004108_220 Hb_011344_120--Hb_004108_220 Hb_000347_240 Hb_000347_240 Hb_011344_120--Hb_000347_240 Hb_007894_060 Hb_007894_060 Hb_007928_030--Hb_007894_060 Hb_001386_040 Hb_001386_040 Hb_007928_030--Hb_001386_040 Hb_000538_120 Hb_000538_120 Hb_007928_030--Hb_000538_120 Hb_000431_170 Hb_000431_170 Hb_007928_030--Hb_000431_170 Hb_007928_030--Hb_005914_170 Hb_000210_120 Hb_000210_120 Hb_005914_170--Hb_000210_120 Hb_001314_050 Hb_001314_050 Hb_005914_170--Hb_001314_050 Hb_031862_100 Hb_031862_100 Hb_005914_170--Hb_031862_100 Hb_003633_050 Hb_003633_050 Hb_005914_170--Hb_003633_050 Hb_023001_040 Hb_023001_040 Hb_005914_170--Hb_023001_040 Hb_008841_020 Hb_008841_020 Hb_001189_070--Hb_008841_020 Hb_000310_090 Hb_000310_090 Hb_001189_070--Hb_000310_090 Hb_001189_070--Hb_000347_240 Hb_001189_070--Hb_031862_100 Hb_001189_070--Hb_001314_050 Hb_001427_160 Hb_001427_160 Hb_009787_030--Hb_001427_160 Hb_001366_370 Hb_001366_370 Hb_009787_030--Hb_001366_370 Hb_000141_080 Hb_000141_080 Hb_009787_030--Hb_000141_080 Hb_000115_150 Hb_000115_150 Hb_009787_030--Hb_000115_150 Hb_002053_140 Hb_002053_140 Hb_009787_030--Hb_002053_140 Hb_002301_150 Hb_002301_150 Hb_004108_220--Hb_002301_150 Hb_005588_060 Hb_005588_060 Hb_004108_220--Hb_005588_060 Hb_149985_010 Hb_149985_010 Hb_004108_220--Hb_149985_010 Hb_168978_010 Hb_168978_010 Hb_004108_220--Hb_168978_010 Hb_000365_270 Hb_000365_270 Hb_004108_220--Hb_000365_270 Hb_012022_040 Hb_012022_040 Hb_004108_220--Hb_012022_040 Hb_000483_300 Hb_000483_300 Hb_000347_240--Hb_000483_300 Hb_004545_110 Hb_004545_110 Hb_000347_240--Hb_004545_110 Hb_001489_090 Hb_001489_090 Hb_000347_240--Hb_001489_090 Hb_006573_190 Hb_006573_190 Hb_000347_240--Hb_006573_190 Hb_000566_120 Hb_000566_120 Hb_000347_240--Hb_000566_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89159 3.13855 3.08125 7.60213 3.32872 4.24246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.5244 8.21229 4.24925 6.01325 3.94178

CAGE analysis