Hb_011344_160

Information

Type -
Description -
Location Contig11344: 144989-147928
Sequence    

Annotation

kegg
ID rcu:RCOM_1679970
description Amine oxidase [copper-containing] precursor, putative
nr
ID XP_012087238.1
description PREDICTED: primary amine oxidase [Jatropha curcas]
swissprot
ID Q8H1H9
description Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1
trembl
ID B9RBR3
description Amine oxidase [copper-containing], putative OS=Ricinus communis GN=RCOM_1679970 PE=3 SV=1
Gene Ontology
ID GO:0005507
description primary amine oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04008: 128199-147859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_160 0.0 - - PREDICTED: primary amine oxidase [Jatropha curcas]
2 Hb_001500_050 0.0799561412 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
3 Hb_007441_130 0.0992940596 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_001511_240 0.1023541464 - - PREDICTED: uncharacterized protein LOC105133574 isoform X3 [Populus euphratica]
5 Hb_006373_010 0.1081323299 - - Potassium transporter 11 [Gossypium arboreum]
6 Hb_000044_040 0.1132818189 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
7 Hb_023480_010 0.119350922 - - cellular nucleic acid binding protein, putative [Ricinus communis]
8 Hb_004218_280 0.1204331961 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
9 Hb_132840_110 0.1233107317 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
10 Hb_003929_110 0.1234394316 - - PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_095595_010 0.124325649 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
12 Hb_006658_020 0.1243732677 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
13 Hb_000100_180 0.1247784823 - - PREDICTED: probable acyl-activating enzyme 16, chloroplastic [Jatropha curcas]
14 Hb_000679_270 0.1255193481 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
15 Hb_000815_130 0.1255827288 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
16 Hb_011316_090 0.1267552048 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
17 Hb_000172_540 0.1274237598 - - hypothetical protein POPTR_0005s08350g [Populus trichocarpa]
18 Hb_001049_090 0.1274330862 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
19 Hb_009193_120 0.1283049201 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
20 Hb_000544_090 0.1286928946 - - PREDICTED: golgin candidate 2 [Jatropha curcas]

Gene co-expression network

sample Hb_011344_160 Hb_011344_160 Hb_001500_050 Hb_001500_050 Hb_011344_160--Hb_001500_050 Hb_007441_130 Hb_007441_130 Hb_011344_160--Hb_007441_130 Hb_001511_240 Hb_001511_240 Hb_011344_160--Hb_001511_240 Hb_006373_010 Hb_006373_010 Hb_011344_160--Hb_006373_010 Hb_000044_040 Hb_000044_040 Hb_011344_160--Hb_000044_040 Hb_023480_010 Hb_023480_010 Hb_011344_160--Hb_023480_010 Hb_001500_050--Hb_000044_040 Hb_007803_060 Hb_007803_060 Hb_001500_050--Hb_007803_060 Hb_000009_090 Hb_000009_090 Hb_001500_050--Hb_000009_090 Hb_002022_060 Hb_002022_060 Hb_001500_050--Hb_002022_060 Hb_001500_050--Hb_006373_010 Hb_007441_130--Hb_000044_040 Hb_000008_290 Hb_000008_290 Hb_007441_130--Hb_000008_290 Hb_007441_130--Hb_023480_010 Hb_004097_070 Hb_004097_070 Hb_007441_130--Hb_004097_070 Hb_007062_020 Hb_007062_020 Hb_007441_130--Hb_007062_020 Hb_006909_070 Hb_006909_070 Hb_007441_130--Hb_006909_070 Hb_007445_010 Hb_007445_010 Hb_001511_240--Hb_007445_010 Hb_001511_240--Hb_006373_010 Hb_009193_120 Hb_009193_120 Hb_001511_240--Hb_009193_120 Hb_007083_030 Hb_007083_030 Hb_001511_240--Hb_007083_030 Hb_007336_010 Hb_007336_010 Hb_001511_240--Hb_007336_010 Hb_004452_110 Hb_004452_110 Hb_001511_240--Hb_004452_110 Hb_011609_140 Hb_011609_140 Hb_006373_010--Hb_011609_140 Hb_006373_010--Hb_009193_120 Hb_006373_010--Hb_007083_030 Hb_006373_010--Hb_000044_040 Hb_021443_040 Hb_021443_040 Hb_006373_010--Hb_021443_040 Hb_000134_270 Hb_000134_270 Hb_000044_040--Hb_000134_270 Hb_001268_280 Hb_001268_280 Hb_000044_040--Hb_001268_280 Hb_000044_040--Hb_021443_040 Hb_000044_040--Hb_004097_070 Hb_003680_150 Hb_003680_150 Hb_023480_010--Hb_003680_150 Hb_000983_150 Hb_000983_150 Hb_023480_010--Hb_000983_150 Hb_000544_090 Hb_000544_090 Hb_023480_010--Hb_000544_090 Hb_002684_040 Hb_002684_040 Hb_023480_010--Hb_002684_040 Hb_003025_110 Hb_003025_110 Hb_023480_010--Hb_003025_110 Hb_000853_230 Hb_000853_230 Hb_023480_010--Hb_000853_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5787 6.06228 4.87625 9.39006 7.07975 9.11255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.87035 3.76271 5.11385 6.24264 11.856

CAGE analysis