Hb_011344_200

Information

Type -
Description -
Location Contig11344: 168106-170129
Sequence    

Annotation

kegg
ID cic:CICLE_v10022677mg
description hypothetical protein
nr
ID BAA96366.1
description cytoplasmic ribosomal protein S13 [Panax ginseng]
swissprot
ID P62302
description 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1
trembl
ID Q9MAV9
description Cytoplasmic ribosomal protein S13 OS=Panax ginseng PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04013: 168138-170068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_200 0.0 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
2 Hb_004449_180 0.1135196106 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
3 Hb_157023_020 0.1138201467 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000035_160 0.1140154371 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
5 Hb_027472_140 0.1208323617 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646176 [Jatropha curcas]
6 Hb_001726_080 0.1239394474 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
7 Hb_002092_120 0.129621717 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
8 Hb_000926_200 0.1297734181 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
9 Hb_040819_010 0.1311897597 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_002272_270 0.1317133151 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
11 Hb_000120_810 0.131978466 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
12 Hb_081599_010 0.1321371112 - - conserved hypothetical protein [Ricinus communis]
13 Hb_155215_020 0.1350603994 - - PREDICTED: RNA-binding protein pno1-like [Populus euphratica]
14 Hb_029920_060 0.1354140753 - - PREDICTED: UPF0554 protein-like isoform X2 [Jatropha curcas]
15 Hb_032202_100 0.1367605734 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
16 Hb_000152_600 0.1372879227 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
17 Hb_000603_160 0.1376546992 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
18 Hb_004607_090 0.1407872424 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
19 Hb_002572_020 0.1409705056 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
20 Hb_002316_140 0.1428255858 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]

Gene co-expression network

sample Hb_011344_200 Hb_011344_200 Hb_004449_180 Hb_004449_180 Hb_011344_200--Hb_004449_180 Hb_157023_020 Hb_157023_020 Hb_011344_200--Hb_157023_020 Hb_000035_160 Hb_000035_160 Hb_011344_200--Hb_000035_160 Hb_027472_140 Hb_027472_140 Hb_011344_200--Hb_027472_140 Hb_001726_080 Hb_001726_080 Hb_011344_200--Hb_001726_080 Hb_002092_120 Hb_002092_120 Hb_011344_200--Hb_002092_120 Hb_000179_270 Hb_000179_270 Hb_004449_180--Hb_000179_270 Hb_002272_270 Hb_002272_270 Hb_004449_180--Hb_002272_270 Hb_000555_100 Hb_000555_100 Hb_004449_180--Hb_000555_100 Hb_000889_010 Hb_000889_010 Hb_004449_180--Hb_000889_010 Hb_000087_070 Hb_000087_070 Hb_004449_180--Hb_000087_070 Hb_000840_200 Hb_000840_200 Hb_157023_020--Hb_000840_200 Hb_002572_020 Hb_002572_020 Hb_157023_020--Hb_002572_020 Hb_073973_090 Hb_073973_090 Hb_157023_020--Hb_073973_090 Hb_000375_390 Hb_000375_390 Hb_157023_020--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_157023_020--Hb_000023_260 Hb_000603_160 Hb_000603_160 Hb_157023_020--Hb_000603_160 Hb_000926_200 Hb_000926_200 Hb_000035_160--Hb_000926_200 Hb_032202_100 Hb_032202_100 Hb_000035_160--Hb_032202_100 Hb_003207_180 Hb_003207_180 Hb_000035_160--Hb_003207_180 Hb_000035_160--Hb_157023_020 Hb_000116_490 Hb_000116_490 Hb_000035_160--Hb_000116_490 Hb_000035_160--Hb_000603_160 Hb_027472_140--Hb_157023_020 Hb_000445_470 Hb_000445_470 Hb_027472_140--Hb_000445_470 Hb_004607_090 Hb_004607_090 Hb_027472_140--Hb_004607_090 Hb_000292_100 Hb_000292_100 Hb_027472_140--Hb_000292_100 Hb_000731_170 Hb_000731_170 Hb_027472_140--Hb_000731_170 Hb_002893_040 Hb_002893_040 Hb_027472_140--Hb_002893_040 Hb_001726_080--Hb_027472_140 Hb_001726_080--Hb_157023_020 Hb_001085_040 Hb_001085_040 Hb_001726_080--Hb_001085_040 Hb_000365_010 Hb_000365_010 Hb_001726_080--Hb_000365_010 Hb_011224_050 Hb_011224_050 Hb_001726_080--Hb_011224_050 Hb_008225_090 Hb_008225_090 Hb_002092_120--Hb_008225_090 Hb_000300_260 Hb_000300_260 Hb_002092_120--Hb_000300_260 Hb_000176_020 Hb_000176_020 Hb_002092_120--Hb_000176_020 Hb_002092_120--Hb_002893_040 Hb_002092_120--Hb_002572_020 Hb_000270_470 Hb_000270_470 Hb_002092_120--Hb_000270_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50277 7.43696 10.5254 13.1056 2.13235 5.28922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.32971 11.2912 1.70297 4.86059 8.06011

CAGE analysis