Hb_011344_210

Information

Type -
Description -
Location Contig11344: 170698-173720
Sequence    

Annotation

kegg
ID rcu:RCOM_1680020
description calmodulin, putative (EC:1.3.1.74)
nr
ID XP_012087102.1
description PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
swissprot
ID Q94AZ4
description Probable calcium-binding protein CML13 OS=Arabidopsis thaliana GN=CML13 PE=2 SV=1
trembl
ID A0A067K1D2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20755 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04014: 172840-173647
cDNA
(Sanger)
(ID:Location)		 039_D14.ab1: 172916-173644 , 039_L20.ab1: 172937-173617 , 042_C19.ab1: 172929-173644 , 045_F01.ab1: 172957-173642 , 048_H16.ab1: 172874-173647

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_210 0.0 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
2 Hb_000580_180 0.0531525101 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001009_270 0.0663871497 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
4 Hb_032208_090 0.0669556655 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
5 Hb_000815_320 0.0702444138 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
6 Hb_005846_040 0.070863472 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
7 Hb_003126_050 0.071107374 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
8 Hb_002863_050 0.0714149331 - - aldose 1-epimerase, putative [Ricinus communis]
9 Hb_007691_030 0.0714605908 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
10 Hb_003417_020 0.0723159425 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
11 Hb_000768_090 0.0725593298 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
12 Hb_001799_210 0.072716332 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
13 Hb_012286_030 0.0728467584 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
14 Hb_000465_160 0.0741273563 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
15 Hb_002375_070 0.0743504048 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003092_040 0.076602611 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
17 Hb_024071_020 0.0766844008 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
18 Hb_000373_070 0.0766873672 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
19 Hb_000580_090 0.0767163034 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
20 Hb_024439_010 0.0773176 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_011344_210 Hb_011344_210 Hb_000580_180 Hb_000580_180 Hb_011344_210--Hb_000580_180 Hb_001009_270 Hb_001009_270 Hb_011344_210--Hb_001009_270 Hb_032208_090 Hb_032208_090 Hb_011344_210--Hb_032208_090 Hb_000815_320 Hb_000815_320 Hb_011344_210--Hb_000815_320 Hb_005846_040 Hb_005846_040 Hb_011344_210--Hb_005846_040 Hb_003126_050 Hb_003126_050 Hb_011344_210--Hb_003126_050 Hb_005144_160 Hb_005144_160 Hb_000580_180--Hb_005144_160 Hb_001142_030 Hb_001142_030 Hb_000580_180--Hb_001142_030 Hb_000120_670 Hb_000120_670 Hb_000580_180--Hb_000120_670 Hb_002863_050 Hb_002863_050 Hb_000580_180--Hb_002863_050 Hb_007691_030 Hb_007691_030 Hb_000580_180--Hb_007691_030 Hb_004907_080 Hb_004907_080 Hb_001009_270--Hb_004907_080 Hb_001009_270--Hb_032208_090 Hb_003177_030 Hb_003177_030 Hb_001009_270--Hb_003177_030 Hb_000777_040 Hb_000777_040 Hb_001009_270--Hb_000777_040 Hb_001799_210 Hb_001799_210 Hb_001009_270--Hb_001799_210 Hb_000465_160 Hb_000465_160 Hb_001009_270--Hb_000465_160 Hb_000579_140 Hb_000579_140 Hb_032208_090--Hb_000579_140 Hb_000451_010 Hb_000451_010 Hb_032208_090--Hb_000451_010 Hb_003092_040 Hb_003092_040 Hb_032208_090--Hb_003092_040 Hb_000618_040 Hb_000618_040 Hb_032208_090--Hb_000618_040 Hb_001821_010 Hb_001821_010 Hb_000815_320--Hb_001821_010 Hb_001662_070 Hb_001662_070 Hb_000815_320--Hb_001662_070 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060 Hb_003151_040 Hb_003151_040 Hb_005846_040--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010 Hb_005846_040--Hb_004116_190 Hb_003417_020 Hb_003417_020 Hb_003126_050--Hb_003417_020 Hb_000640_240 Hb_000640_240 Hb_003126_050--Hb_000640_240 Hb_003126_050--Hb_003092_040 Hb_000041_270 Hb_000041_270 Hb_003126_050--Hb_000041_270 Hb_096563_010 Hb_096563_010 Hb_003126_050--Hb_096563_010 Hb_003126_050--Hb_007691_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.1024 66.4025 84.656 101.111 100.917 100.78
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.29 153.916 121.13 67.3139 42.6451

CAGE analysis