Hb_011360_060

Information

Type -
Description -
Location Contig11360: 23956-34651
Sequence    

Annotation

kegg
ID rcu:RCOM_0524530
description glycogen phosphorylase, putative (EC:2.4.1.1)
nr
ID XP_002526085.1
description glycogen phosphorylase, putative [Ricinus communis]
swissprot
ID P04045
description Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2
trembl
ID B9SJB6
description Alpha-1,4 glucan phosphorylase OS=Ricinus communis GN=RCOM_0524530 PE=3 SV=1
Gene Ontology
ID GO:0008184
description alpha- glucan phosphorylase l chloroplastic amyloplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04082: 23194-23546 , PASA_asmbl_04083: 24752-34651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011360_060 0.0 - - glycogen phosphorylase, putative [Ricinus communis]
2 Hb_000173_260 0.1035586403 - - hypothetical protein L484_010046 [Morus notabilis]
3 Hb_000347_110 0.1086355848 - - BnaA05g25330D [Brassica napus]
4 Hb_000181_020 0.1215841099 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
5 Hb_002026_070 0.1431548874 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
6 Hb_000041_060 0.1437206346 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_000625_030 0.1457531506 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
8 Hb_004041_100 0.1486406766 - - -
9 Hb_000668_110 0.149872668 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
10 Hb_003813_120 0.1582503005 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000330_150 0.1627730033 - - PREDICTED: dihydroflavonol-4-reductase-like [Jatropha curcas]
12 Hb_000337_010 0.1637444145 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
13 Hb_000702_060 0.1684175563 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001500_070 0.1708323815 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002272_230 0.1709794661 - - sodium/hydrogen exchanger, putative [Ricinus communis]
16 Hb_001780_130 0.1738063303 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
17 Hb_000823_010 0.1754522932 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
18 Hb_033594_100 0.1770689493 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_008749_020 0.1784746375 - - conserved hypothetical protein [Ricinus communis]
20 Hb_098315_090 0.1792957925 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]

Gene co-expression network

sample Hb_011360_060 Hb_011360_060 Hb_000173_260 Hb_000173_260 Hb_011360_060--Hb_000173_260 Hb_000347_110 Hb_000347_110 Hb_011360_060--Hb_000347_110 Hb_000181_020 Hb_000181_020 Hb_011360_060--Hb_000181_020 Hb_002026_070 Hb_002026_070 Hb_011360_060--Hb_002026_070 Hb_000041_060 Hb_000041_060 Hb_011360_060--Hb_000041_060 Hb_000625_030 Hb_000625_030 Hb_011360_060--Hb_000625_030 Hb_000173_260--Hb_000347_110 Hb_004041_100 Hb_004041_100 Hb_000173_260--Hb_004041_100 Hb_000173_260--Hb_000625_030 Hb_002272_230 Hb_002272_230 Hb_000173_260--Hb_002272_230 Hb_000173_260--Hb_000181_020 Hb_003813_120 Hb_003813_120 Hb_000347_110--Hb_003813_120 Hb_000347_110--Hb_004041_100 Hb_000347_110--Hb_000181_020 Hb_003626_040 Hb_003626_040 Hb_000347_110--Hb_003626_040 Hb_000181_020--Hb_004041_100 Hb_000181_020--Hb_000625_030 Hb_006846_120 Hb_006846_120 Hb_000181_020--Hb_006846_120 Hb_001500_070 Hb_001500_070 Hb_000181_020--Hb_001500_070 Hb_014497_060 Hb_014497_060 Hb_002026_070--Hb_014497_060 Hb_169586_010 Hb_169586_010 Hb_002026_070--Hb_169586_010 Hb_000019_170 Hb_000019_170 Hb_002026_070--Hb_000019_170 Hb_000922_260 Hb_000922_260 Hb_002026_070--Hb_000922_260 Hb_000244_260 Hb_000244_260 Hb_002026_070--Hb_000244_260 Hb_002232_490 Hb_002232_490 Hb_002026_070--Hb_002232_490 Hb_000808_170 Hb_000808_170 Hb_000041_060--Hb_000808_170 Hb_001369_230 Hb_001369_230 Hb_000041_060--Hb_001369_230 Hb_000041_060--Hb_001500_070 Hb_003626_050 Hb_003626_050 Hb_000041_060--Hb_003626_050 Hb_000041_060--Hb_000347_110 Hb_004129_050 Hb_004129_050 Hb_000041_060--Hb_004129_050 Hb_008749_020 Hb_008749_020 Hb_000625_030--Hb_008749_020 Hb_000625_030--Hb_004041_100 Hb_000625_030--Hb_001500_070 Hb_001040_150 Hb_001040_150 Hb_000625_030--Hb_001040_150 Hb_000720_090 Hb_000720_090 Hb_000625_030--Hb_000720_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.49062 9.58517 12.2694 12.936 4.06781 4.18434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.88248 1.19601 2.6018 53.292 22.8225

CAGE analysis