Hb_011360_070

Information

Type -
Description -
Location Contig11360: 35833-38924
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12730g
description POPTRDRAFT_577729; hypothetical protein
nr
ID XP_012084800.1
description PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K622
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19918 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger rna-binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04085: 36056-38627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011360_070 0.0 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
2 Hb_000421_220 0.075774037 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
3 Hb_002183_060 0.0774361883 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
4 Hb_003605_090 0.085653196 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
5 Hb_003697_040 0.0863935823 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
6 Hb_008453_030 0.086492134 - - Thioredoxin superfamily protein [Theobroma cacao]
7 Hb_004127_020 0.0881516034 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
8 Hb_003768_030 0.0885914114 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
9 Hb_000053_020 0.0908203343 - - F-box and wd40 domain protein, putative [Ricinus communis]
10 Hb_000289_110 0.090822506 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
11 Hb_023278_020 0.0927792347 - - Peroxin 3 isoform 1 [Theobroma cacao]
12 Hb_001512_030 0.0933865144 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
13 Hb_025240_040 0.0966130187 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
14 Hb_004934_100 0.0968946357 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001006_020 0.0973493767 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
16 Hb_000985_030 0.0974274274 - - PREDICTED: RRP15-like protein [Populus euphratica]
17 Hb_000061_210 0.0975320888 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
18 Hb_004889_010 0.0978058729 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
19 Hb_004324_270 0.0981062231 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
20 Hb_004899_370 0.0982075882 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]

Gene co-expression network

sample Hb_011360_070 Hb_011360_070 Hb_000421_220 Hb_000421_220 Hb_011360_070--Hb_000421_220 Hb_002183_060 Hb_002183_060 Hb_011360_070--Hb_002183_060 Hb_003605_090 Hb_003605_090 Hb_011360_070--Hb_003605_090 Hb_003697_040 Hb_003697_040 Hb_011360_070--Hb_003697_040 Hb_008453_030 Hb_008453_030 Hb_011360_070--Hb_008453_030 Hb_004127_020 Hb_004127_020 Hb_011360_070--Hb_004127_020 Hb_000421_220--Hb_002183_060 Hb_000421_220--Hb_008453_030 Hb_004934_100 Hb_004934_100 Hb_000421_220--Hb_004934_100 Hb_025240_040 Hb_025240_040 Hb_000421_220--Hb_025240_040 Hb_001234_100 Hb_001234_100 Hb_000421_220--Hb_001234_100 Hb_015934_070 Hb_015934_070 Hb_000421_220--Hb_015934_070 Hb_001386_040 Hb_001386_040 Hb_002183_060--Hb_001386_040 Hb_002183_060--Hb_008453_030 Hb_002183_060--Hb_015934_070 Hb_031862_100 Hb_031862_100 Hb_002183_060--Hb_031862_100 Hb_002183_060--Hb_003697_040 Hb_003605_090--Hb_003697_040 Hb_000477_060 Hb_000477_060 Hb_003605_090--Hb_000477_060 Hb_000703_350 Hb_000703_350 Hb_003605_090--Hb_000703_350 Hb_009615_070 Hb_009615_070 Hb_003605_090--Hb_009615_070 Hb_003605_090--Hb_004934_100 Hb_001252_130 Hb_001252_130 Hb_003605_090--Hb_001252_130 Hb_003697_040--Hb_000477_060 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020 Hb_008453_030--Hb_004934_100 Hb_000107_160 Hb_000107_160 Hb_008453_030--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_008453_030--Hb_000061_210 Hb_000373_070 Hb_000373_070 Hb_008453_030--Hb_000373_070 Hb_000081_160 Hb_000081_160 Hb_008453_030--Hb_000081_160 Hb_000479_090 Hb_000479_090 Hb_004127_020--Hb_000479_090 Hb_004143_150 Hb_004143_150 Hb_004127_020--Hb_004143_150 Hb_000265_050 Hb_000265_050 Hb_004127_020--Hb_000265_050 Hb_004899_370 Hb_004899_370 Hb_004127_020--Hb_004899_370 Hb_002798_020 Hb_002798_020 Hb_004127_020--Hb_002798_020 Hb_000840_180 Hb_000840_180 Hb_004127_020--Hb_000840_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.92851 3.21838 4.66744 8.07255 4.30515 8.9313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2403 16.1385 10.0806 6.65965 10.7246

CAGE analysis