Hb_011360_080

Information

Type transcription factor
Description TF Family: C2H2
Location Contig11360: 41137-42879
Sequence    

Annotation

kegg
ID rcu:RCOM_0524660
description zinc finger protein, putative
nr
ID XP_002526088.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9SSW1
description Zinc finger protein AZF1 OS=Arabidopsis thaliana GN=AZF1 PE=2 SV=1
trembl
ID B9SJB9
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0524660 PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04088: 41961-42411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011360_080 0.0 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
2 Hb_000477_080 0.1123212306 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
3 Hb_004429_070 0.1200924845 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
4 Hb_002290_040 0.1300443493 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000368_060 0.1326260639 - - thioredoxin H-type 6 [Hevea brasiliensis]
6 Hb_000141_030 0.1365640703 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
7 Hb_002756_020 0.14105134 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
8 Hb_004324_050 0.1424422764 - - PREDICTED: spermine synthase [Jatropha curcas]
9 Hb_012573_030 0.1433469696 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000963_140 0.1542927161 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_007429_030 0.1603269996 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
12 Hb_001159_080 0.1603468949 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
13 Hb_000562_040 0.1614774006 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
14 Hb_003943_030 0.1673686401 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
15 Hb_000327_220 0.1688576666 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
16 Hb_001277_090 0.1695087996 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
17 Hb_000094_130 0.1700283321 - - PREDICTED: random slug protein 5 [Jatropha curcas]
18 Hb_003551_050 0.1702276768 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
19 Hb_009265_060 0.1735396301 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
20 Hb_000103_110 0.1762095163 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011360_080 Hb_011360_080 Hb_000477_080 Hb_000477_080 Hb_011360_080--Hb_000477_080 Hb_004429_070 Hb_004429_070 Hb_011360_080--Hb_004429_070 Hb_002290_040 Hb_002290_040 Hb_011360_080--Hb_002290_040 Hb_000368_060 Hb_000368_060 Hb_011360_080--Hb_000368_060 Hb_000141_030 Hb_000141_030 Hb_011360_080--Hb_000141_030 Hb_002756_020 Hb_002756_020 Hb_011360_080--Hb_002756_020 Hb_000477_080--Hb_000141_030 Hb_000477_080--Hb_000368_060 Hb_000477_080--Hb_004429_070 Hb_000562_040 Hb_000562_040 Hb_000477_080--Hb_000562_040 Hb_000103_110 Hb_000103_110 Hb_000477_080--Hb_000103_110 Hb_004429_070--Hb_002756_020 Hb_004429_070--Hb_002290_040 Hb_004324_050 Hb_004324_050 Hb_004429_070--Hb_004324_050 Hb_000327_220 Hb_000327_220 Hb_004429_070--Hb_000327_220 Hb_004429_070--Hb_000141_030 Hb_002290_040--Hb_002756_020 Hb_001959_160 Hb_001959_160 Hb_002290_040--Hb_001959_160 Hb_003147_050 Hb_003147_050 Hb_002290_040--Hb_003147_050 Hb_003943_030 Hb_003943_030 Hb_002290_040--Hb_003943_030 Hb_001153_220 Hb_001153_220 Hb_002290_040--Hb_001153_220 Hb_000368_060--Hb_000562_040 Hb_005539_240 Hb_005539_240 Hb_000368_060--Hb_005539_240 Hb_000784_030 Hb_000784_030 Hb_000368_060--Hb_000784_030 Hb_000368_060--Hb_000103_110 Hb_003581_260 Hb_003581_260 Hb_000368_060--Hb_003581_260 Hb_000963_140 Hb_000963_140 Hb_000141_030--Hb_000963_140 Hb_010931_050 Hb_010931_050 Hb_000141_030--Hb_010931_050 Hb_000141_030--Hb_004324_050 Hb_000141_030--Hb_000368_060 Hb_002756_020--Hb_000327_220 Hb_006816_450 Hb_006816_450 Hb_002756_020--Hb_006816_450 Hb_005614_050 Hb_005614_050 Hb_002756_020--Hb_005614_050 Hb_003551_050 Hb_003551_050 Hb_002756_020--Hb_003551_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.69792 1.21536 0.282541 2.10632 2.9454 2.0557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.73847 5.964 22.7238 2.07912 1.83002

CAGE analysis