Hb_011360_110

Information

Type -
Description -
Location Contig11360: 59412-62037
Sequence    

Annotation

kegg
ID vvi:100264653
description UDP-glucose 6-dehydrogenase-like
nr
ID XP_002284346.1
description PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
swissprot
ID Q96558
description UDP-glucose 6-dehydrogenase 1 OS=Glycine max GN=UGD1 PE=2 SV=1
trembl
ID A5AVX9
description UDP-glucose 6-dehydrogenase OS=Vitis vinifera GN=VITISV_020300 PE=3 SV=1
Gene Ontology
ID GO:0003979
description udp-glucose 6-dehydrogenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04094: 58994-61950 , PASA_asmbl_04095: 61346-61807
cDNA
(Sanger)
(ID:Location)		 005_N16.ab1: 60201-61824 , 042_M04.ab1: 60201-61824

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011360_110 0.0 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
2 Hb_001474_020 0.0802443284 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
3 Hb_028639_030 0.1014260254 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
4 Hb_132840_160 0.1059195385 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005489_150 0.1164520919 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
6 Hb_004449_250 0.1196386926 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
7 Hb_000320_350 0.122929726 - - hypothetical protein RCOM_0904330 [Ricinus communis]
8 Hb_012707_040 0.1248354015 - - PREDICTED: probable inactive purple acid phosphatase 29 [Jatropha curcas]
9 Hb_000928_120 0.1253434587 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
10 Hb_000570_020 0.1257615602 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
11 Hb_007537_030 0.1287692965 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
12 Hb_003470_110 0.1318197663 - - unnamed protein product [Vitis vinifera]
13 Hb_002046_060 0.1343432485 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
14 Hb_003371_070 0.1362743891 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
15 Hb_000849_120 0.1377361575 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
16 Hb_006469_070 0.1377523764 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
17 Hb_004109_050 0.1409659652 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
18 Hb_009674_010 0.1411988936 - - AAEL007687-PA [Aedes aegypti]
19 Hb_000696_070 0.1421152334 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
20 Hb_002217_500 0.1438817854 - - hypothetical protein JCGZ_19014 [Jatropha curcas]

Gene co-expression network

sample Hb_011360_110 Hb_011360_110 Hb_001474_020 Hb_001474_020 Hb_011360_110--Hb_001474_020 Hb_028639_030 Hb_028639_030 Hb_011360_110--Hb_028639_030 Hb_132840_160 Hb_132840_160 Hb_011360_110--Hb_132840_160 Hb_005489_150 Hb_005489_150 Hb_011360_110--Hb_005489_150 Hb_004449_250 Hb_004449_250 Hb_011360_110--Hb_004449_250 Hb_000320_350 Hb_000320_350 Hb_011360_110--Hb_000320_350 Hb_001474_020--Hb_132840_160 Hb_002046_060 Hb_002046_060 Hb_001474_020--Hb_002046_060 Hb_002217_500 Hb_002217_500 Hb_001474_020--Hb_002217_500 Hb_006469_070 Hb_006469_070 Hb_001474_020--Hb_006469_070 Hb_023344_110 Hb_023344_110 Hb_001474_020--Hb_023344_110 Hb_001216_110 Hb_001216_110 Hb_028639_030--Hb_001216_110 Hb_000570_020 Hb_000570_020 Hb_028639_030--Hb_000570_020 Hb_021576_070 Hb_021576_070 Hb_028639_030--Hb_021576_070 Hb_000679_040 Hb_000679_040 Hb_028639_030--Hb_000679_040 Hb_001195_090 Hb_001195_090 Hb_028639_030--Hb_001195_090 Hb_132840_160--Hb_002046_060 Hb_003371_070 Hb_003371_070 Hb_132840_160--Hb_003371_070 Hb_000057_130 Hb_000057_130 Hb_132840_160--Hb_000057_130 Hb_000339_020 Hb_000339_020 Hb_132840_160--Hb_000339_020 Hb_005539_140 Hb_005539_140 Hb_005489_150--Hb_005539_140 Hb_002289_150 Hb_002289_150 Hb_005489_150--Hb_002289_150 Hb_005489_150--Hb_028639_030 Hb_005489_150--Hb_000320_350 Hb_000300_230 Hb_000300_230 Hb_005489_150--Hb_000300_230 Hb_004449_250--Hb_000320_350 Hb_012707_040 Hb_012707_040 Hb_004449_250--Hb_012707_040 Hb_003006_080 Hb_003006_080 Hb_004449_250--Hb_003006_080 Hb_000258_050 Hb_000258_050 Hb_004449_250--Hb_000258_050 Hb_007537_030 Hb_007537_030 Hb_004449_250--Hb_007537_030 Hb_000603_020 Hb_000603_020 Hb_000320_350--Hb_000603_020 Hb_003001_130 Hb_003001_130 Hb_000320_350--Hb_003001_130 Hb_000320_350--Hb_028639_030 Hb_000928_120 Hb_000928_120 Hb_000320_350--Hb_000928_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5385 98.6133 72.4255 305.596 8.78535 17.8886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.9422 38.5619 58.5006 74.5977 173.606

CAGE analysis