Hb_011360_140

Information

Type -
Description -
Location Contig11360: 72092-74236
Sequence    

Annotation

kegg
ID rcu:RCOM_0524820
description 40S ribosomal protein S19, putative
nr
ID XP_002526094.1
description 40S ribosomal protein S19, putative [Ricinus communis]
swissprot
ID Q9FNP8
description 40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1
trembl
ID B9SJC5
description 40S ribosomal protein S19, putative OS=Ricinus communis GN=RCOM_0524820 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s19-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04101: 72197-74169 , PASA_asmbl_04102: 72366-72711
cDNA
(Sanger)
(ID:Location)		 004_N21.ab1: 72224-74163 , 012_A19.ab1: 72219-74153 , 018_G16.ab1: 72219-74153 , 020_B02.ab1: 72219-74153

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011360_140 0.0 - - 40S ribosomal protein S19, putative [Ricinus communis]
2 Hb_000473_040 0.0546434524 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
3 Hb_011571_020 0.0563964288 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
4 Hb_000933_180 0.0588575476 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
5 Hb_000392_440 0.060978694 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
6 Hb_001828_090 0.061898569 - - prohibitin, putative [Ricinus communis]
7 Hb_005993_040 0.0619706763 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
8 Hb_002007_060 0.0644980002 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
9 Hb_000661_250 0.06538647 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
10 Hb_001369_650 0.0670300375 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
11 Hb_009767_120 0.0683461178 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
12 Hb_000015_080 0.0697924972 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
13 Hb_000000_160 0.0700342595 - - PREDICTED: membrin-11 [Jatropha curcas]
14 Hb_000392_270 0.070913732 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
15 Hb_000494_020 0.0710017677 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
16 Hb_010661_030 0.072921856 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
17 Hb_002868_010 0.0747487648 - - 60S ribosomal protein L30, putative [Ricinus communis]
18 Hb_003540_040 0.0766852866 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
19 Hb_003050_080 0.0776841285 - - 40S ribosomal protein S14, putative [Ricinus communis]
20 Hb_003939_080 0.078400028 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011360_140 Hb_011360_140 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011571_020 Hb_011571_020 Hb_011360_140--Hb_011571_020 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_000392_440 Hb_000392_440 Hb_011360_140--Hb_000392_440 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_005993_040 Hb_005993_040 Hb_011360_140--Hb_005993_040 Hb_012762_050 Hb_012762_050 Hb_000473_040--Hb_012762_050 Hb_135545_010 Hb_135545_010 Hb_000473_040--Hb_135545_010 Hb_005332_070 Hb_005332_070 Hb_000473_040--Hb_005332_070 Hb_002007_060 Hb_002007_060 Hb_000473_040--Hb_002007_060 Hb_000473_040--Hb_011571_020 Hb_003001_140 Hb_003001_140 Hb_011571_020--Hb_003001_140 Hb_011571_020--Hb_005993_040 Hb_001301_160 Hb_001301_160 Hb_011571_020--Hb_001301_160 Hb_011571_020--Hb_005332_070 Hb_009767_120 Hb_009767_120 Hb_000933_180--Hb_009767_120 Hb_000107_050 Hb_000107_050 Hb_000933_180--Hb_000107_050 Hb_000494_020 Hb_000494_020 Hb_000933_180--Hb_000494_020 Hb_002233_150 Hb_002233_150 Hb_000933_180--Hb_002233_150 Hb_010128_130 Hb_010128_130 Hb_000933_180--Hb_010128_130 Hb_000392_440--Hb_005993_040 Hb_010661_030 Hb_010661_030 Hb_000392_440--Hb_010661_030 Hb_002928_130 Hb_002928_130 Hb_000392_440--Hb_002928_130 Hb_000015_080 Hb_000015_080 Hb_000392_440--Hb_000015_080 Hb_000392_440--Hb_011571_020 Hb_007101_150 Hb_007101_150 Hb_001828_090--Hb_007101_150 Hb_000221_220 Hb_000221_220 Hb_001828_090--Hb_000221_220 Hb_001379_060 Hb_001379_060 Hb_001828_090--Hb_001379_060 Hb_001512_070 Hb_001512_070 Hb_001828_090--Hb_001512_070 Hb_000684_090 Hb_000684_090 Hb_001828_090--Hb_000684_090 Hb_002043_190 Hb_002043_190 Hb_005993_040--Hb_002043_190 Hb_005993_040--Hb_002928_130 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
426.219 162.849 198.974 104.814 383.867 447.219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
418.314 577.579 287.13 152.404 90.6942

CAGE analysis