Hb_011362_030

Information

Type -
Description -
Location Contig11362: 21367-26251
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011362_030 0.0 - - polyprotein [Oryza australiensis]
2 Hb_012733_080 0.0084455502 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_006183_010 0.009247775 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_080147_010 0.0103902288 - - -
5 Hb_002800_040 0.0392197753 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_004162_110 0.0396006498 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
7 Hb_000243_100 0.0396305301 - - Purple acid phosphatase precursor, putative [Ricinus communis]
8 Hb_078466_020 0.0427026433 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
9 Hb_002871_200 0.0690336041 - - -
10 Hb_003581_040 0.0701003458 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
11 Hb_022348_020 0.0722054476 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_001854_010 0.0902450789 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_000078_040 0.0915447265 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
14 Hb_012815_020 0.105503634 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_007139_010 0.1062315328 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
16 Hb_019859_030 0.1065188811 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
17 Hb_124976_010 0.1135860629 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_004410_060 0.1336833136 - - -
19 Hb_007545_160 0.1691700961 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
20 Hb_000486_050 0.1810017813 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_011362_030 Hb_011362_030 Hb_012733_080 Hb_012733_080 Hb_011362_030--Hb_012733_080 Hb_006183_010 Hb_006183_010 Hb_011362_030--Hb_006183_010 Hb_080147_010 Hb_080147_010 Hb_011362_030--Hb_080147_010 Hb_002800_040 Hb_002800_040 Hb_011362_030--Hb_002800_040 Hb_004162_110 Hb_004162_110 Hb_011362_030--Hb_004162_110 Hb_000243_100 Hb_000243_100 Hb_011362_030--Hb_000243_100 Hb_012733_080--Hb_006183_010 Hb_012733_080--Hb_080147_010 Hb_078466_020 Hb_078466_020 Hb_012733_080--Hb_078466_020 Hb_012733_080--Hb_002800_040 Hb_012733_080--Hb_004162_110 Hb_006183_010--Hb_080147_010 Hb_006183_010--Hb_078466_020 Hb_006183_010--Hb_002800_040 Hb_006183_010--Hb_004162_110 Hb_080147_010--Hb_078466_020 Hb_080147_010--Hb_002800_040 Hb_080147_010--Hb_004162_110 Hb_002800_040--Hb_004162_110 Hb_002800_040--Hb_000243_100 Hb_004162_110--Hb_000243_100 Hb_000243_100--Hb_012733_080 Hb_000243_100--Hb_006183_010 Hb_000243_100--Hb_080147_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0075348 0 0 0 0.0080003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis