Hb_011377_040

Information

Type -
Description -
Location Contig11377: 36988-49469
Sequence    

Annotation

kegg
ID rcu:RCOM_1438660
description hypothetical protein
nr
ID XP_012088693.1
description PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
swissprot
ID Q67YC9
description Uncharacterized protein At4g14100 OS=Arabidopsis thaliana GN=At4g14100 PE=2 SV=1
trembl
ID A0A067JKD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23081 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04117: 37872-41756 , PASA_asmbl_04120: 48368-49399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011377_040 0.0 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
2 Hb_006970_020 0.0632750383 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
3 Hb_074197_040 0.0690463818 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
4 Hb_012330_010 0.0747000746 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
5 Hb_001301_270 0.0768303315 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
6 Hb_000078_140 0.0790601626 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
7 Hb_000046_540 0.0869058498 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
8 Hb_001689_040 0.0885903734 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Jatropha curcas]
9 Hb_005846_050 0.0896128402 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
10 Hb_007416_210 0.0921698398 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
11 Hb_000406_210 0.0929262449 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
12 Hb_000815_300 0.0931572716 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
13 Hb_002684_020 0.0936080333 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
14 Hb_021510_010 0.0936498057 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
15 Hb_065500_020 0.0943528152 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
16 Hb_002874_110 0.094768483 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
17 Hb_002552_040 0.0950060176 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
18 Hb_065968_010 0.0952303838 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
19 Hb_003340_010 0.095537842 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
20 Hb_004218_190 0.0962215453 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011377_040 Hb_011377_040 Hb_006970_020 Hb_006970_020 Hb_011377_040--Hb_006970_020 Hb_074197_040 Hb_074197_040 Hb_011377_040--Hb_074197_040 Hb_012330_010 Hb_012330_010 Hb_011377_040--Hb_012330_010 Hb_001301_270 Hb_001301_270 Hb_011377_040--Hb_001301_270 Hb_000078_140 Hb_000078_140 Hb_011377_040--Hb_000078_140 Hb_000046_540 Hb_000046_540 Hb_011377_040--Hb_000046_540 Hb_000815_300 Hb_000815_300 Hb_006970_020--Hb_000815_300 Hb_002684_020 Hb_002684_020 Hb_006970_020--Hb_002684_020 Hb_006970_020--Hb_000078_140 Hb_000862_100 Hb_000862_100 Hb_006970_020--Hb_000862_100 Hb_015884_020 Hb_015884_020 Hb_006970_020--Hb_015884_020 Hb_074197_040--Hb_000078_140 Hb_074197_040--Hb_000815_300 Hb_074197_040--Hb_001301_270 Hb_065968_010 Hb_065968_010 Hb_074197_040--Hb_065968_010 Hb_074197_040--Hb_006970_020 Hb_012733_070 Hb_012733_070 Hb_012330_010--Hb_012733_070 Hb_003280_020 Hb_003280_020 Hb_012330_010--Hb_003280_020 Hb_001348_080 Hb_001348_080 Hb_012330_010--Hb_001348_080 Hb_008511_020 Hb_008511_020 Hb_012330_010--Hb_008511_020 Hb_002749_060 Hb_002749_060 Hb_012330_010--Hb_002749_060 Hb_002027_080 Hb_002027_080 Hb_012330_010--Hb_002027_080 Hb_032202_220 Hb_032202_220 Hb_001301_270--Hb_032202_220 Hb_001301_270--Hb_006970_020 Hb_001301_270--Hb_000078_140 Hb_001301_270--Hb_000815_300 Hb_001329_250 Hb_001329_250 Hb_001301_270--Hb_001329_250 Hb_000139_080 Hb_000139_080 Hb_000078_140--Hb_000139_080 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_000078_140--Hb_032202_220 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_002078_340 Hb_002078_340 Hb_000046_540--Hb_002078_340 Hb_002025_250 Hb_002025_250 Hb_000046_540--Hb_002025_250 Hb_000046_540--Hb_000078_140 Hb_000046_540--Hb_001195_400 Hb_002769_030 Hb_002769_030 Hb_000046_540--Hb_002769_030 Hb_000300_470 Hb_000300_470 Hb_000046_540--Hb_000300_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.46022 5.69516 10.5901 11.0536 5.03261 6.23487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.60555 3.26269 7.99768 9.62075 13.6754

CAGE analysis