Hb_011377_050

Information

Type -
Description -
Location Contig11377: 52173-53117
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12880g
description POPTRDRAFT_548117; hypothetical protein
nr
ID XP_012088696.1
description PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Jatropha curcas]
swissprot
ID Q8LE94
description E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1
trembl
ID A0A067JTE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23083 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase at3g02290-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04121: 50953-51274 , PASA_asmbl_04122: 50596-51270 , PASA_asmbl_04123: 51459-52227 , PASA_asmbl_04124: 52500-53660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011377_050 0.0 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Jatropha curcas]
2 Hb_000483_390 0.0965125465 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
3 Hb_114310_080 0.1023857829 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000019_070 0.1035224348 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
5 Hb_000140_050 0.112498808 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
6 Hb_006472_050 0.1133828276 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
7 Hb_003540_030 0.1144755829 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
8 Hb_000292_060 0.1206038788 - - transporter, putative [Ricinus communis]
9 Hb_003207_170 0.1209322079 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
10 Hb_000127_120 0.1222584206 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000638_170 0.1226344757 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
12 Hb_001008_090 0.1247795179 - - cytochrome C oxidase, putative [Ricinus communis]
13 Hb_000748_130 0.1260031154 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
14 Hb_002182_030 0.1273725329 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
15 Hb_001461_010 0.128271098 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
16 Hb_000161_060 0.1294172704 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
17 Hb_092107_010 0.1297658661 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000260_210 0.1298876598 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000392_380 0.1302836109 - - ubiquitin-conjugating enzyme [Medicago truncatula]
20 Hb_009486_020 0.1305053886 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_011377_050 Hb_011377_050 Hb_000483_390 Hb_000483_390 Hb_011377_050--Hb_000483_390 Hb_114310_080 Hb_114310_080 Hb_011377_050--Hb_114310_080 Hb_000019_070 Hb_000019_070 Hb_011377_050--Hb_000019_070 Hb_000140_050 Hb_000140_050 Hb_011377_050--Hb_000140_050 Hb_006472_050 Hb_006472_050 Hb_011377_050--Hb_006472_050 Hb_003540_030 Hb_003540_030 Hb_011377_050--Hb_003540_030 Hb_000483_390--Hb_114310_080 Hb_003414_050 Hb_003414_050 Hb_000483_390--Hb_003414_050 Hb_000638_170 Hb_000638_170 Hb_000483_390--Hb_000638_170 Hb_011381_080 Hb_011381_080 Hb_000483_390--Hb_011381_080 Hb_003671_020 Hb_003671_020 Hb_000483_390--Hb_003671_020 Hb_028515_010 Hb_028515_010 Hb_000483_390--Hb_028515_010 Hb_000985_060 Hb_000985_060 Hb_114310_080--Hb_000985_060 Hb_114310_080--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_114310_080--Hb_029388_030 Hb_000417_260 Hb_000417_260 Hb_114310_080--Hb_000417_260 Hb_001461_010 Hb_001461_010 Hb_114310_080--Hb_001461_010 Hb_003207_170 Hb_003207_170 Hb_000019_070--Hb_003207_170 Hb_000019_070--Hb_114310_080 Hb_000019_070--Hb_000483_390 Hb_000392_380 Hb_000392_380 Hb_000019_070--Hb_000392_380 Hb_000019_070--Hb_003671_020 Hb_000140_050--Hb_003540_030 Hb_006831_120 Hb_006831_120 Hb_000140_050--Hb_006831_120 Hb_001545_100 Hb_001545_100 Hb_000140_050--Hb_001545_100 Hb_001776_160 Hb_001776_160 Hb_000140_050--Hb_001776_160 Hb_028872_080 Hb_028872_080 Hb_000140_050--Hb_028872_080 Hb_007904_260 Hb_007904_260 Hb_000140_050--Hb_007904_260 Hb_002182_030 Hb_002182_030 Hb_006472_050--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_006472_050--Hb_001135_210 Hb_000963_180 Hb_000963_180 Hb_006472_050--Hb_000963_180 Hb_000224_120 Hb_000224_120 Hb_006472_050--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_006472_050--Hb_000046_290 Hb_001153_060 Hb_001153_060 Hb_006472_050--Hb_001153_060 Hb_003540_030--Hb_001545_100 Hb_000120_960 Hb_000120_960 Hb_003540_030--Hb_000120_960 Hb_003540_030--Hb_001776_160 Hb_000436_130 Hb_000436_130 Hb_003540_030--Hb_000436_130 Hb_000086_280 Hb_000086_280 Hb_003540_030--Hb_000086_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.98835 1.29821 2.26585 6.2636 1.8212 3.99204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.06114 8.65813 12.1483 1.80729 2.69605

CAGE analysis