Hb_011380_020

Information

Type -
Description -
Location Contig11380: 16812-21759
Sequence    

Annotation

kegg
ID fve:101309167
description ubiquitin carboxyl-terminal hydrolase 15-like
nr
ID XP_011044935.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X4 [Populus euphratica]
swissprot
ID Q9FPS9
description Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2
trembl
ID M5WFH1
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000901mg PE=4 SV=1
Gene Ontology
ID GO:0008233
description ubiquitin carboxyl-terminal hydrolase 15 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011380_020 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X4 [Populus euphratica]
2 Hb_000072_070 0.2055774269 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
3 Hb_004680_080 0.2120640894 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_000575_030 0.2222188646 - - unnamed protein product [Vitis vinifera]
5 Hb_000317_490 0.2242100508 - - Gibberellin receptor GID1, putative [Ricinus communis]
6 Hb_011316_100 0.2317700445 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
7 Hb_008062_040 0.2359342875 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
8 Hb_000540_050 0.2399329494 - - PREDICTED: 125 kDa kinesin-related protein-like [Jatropha curcas]
9 Hb_004007_160 0.2406503264 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
10 Hb_002471_100 0.2439055925 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
11 Hb_100414_010 0.2444167223 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl pyrophosphate synthase [Hevea brasiliensis]
12 Hb_000390_110 0.247167471 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
13 Hb_004705_040 0.2473276515 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
14 Hb_000421_180 0.2537454068 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000032_440 0.2537462901 - - protein with unknown function [Ricinus communis]
16 Hb_006132_070 0.2546985784 - - phosphate transporter [Manihot esculenta]
17 Hb_005739_010 0.2548394005 - - hypothetical protein JCGZ_04016 [Jatropha curcas]
18 Hb_019516_090 0.2548458452 - - hypothetical protein POPTR_0004s06350g [Populus trichocarpa]
19 Hb_007479_050 0.2555409974 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
20 Hb_000331_460 0.2563190282 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011380_020 Hb_011380_020 Hb_000072_070 Hb_000072_070 Hb_011380_020--Hb_000072_070 Hb_004680_080 Hb_004680_080 Hb_011380_020--Hb_004680_080 Hb_000575_030 Hb_000575_030 Hb_011380_020--Hb_000575_030 Hb_000317_490 Hb_000317_490 Hb_011380_020--Hb_000317_490 Hb_011316_100 Hb_011316_100 Hb_011380_020--Hb_011316_100 Hb_008062_040 Hb_008062_040 Hb_011380_020--Hb_008062_040 Hb_000072_070--Hb_011316_100 Hb_000189_310 Hb_000189_310 Hb_000072_070--Hb_000189_310 Hb_004007_160 Hb_004007_160 Hb_000072_070--Hb_004007_160 Hb_000072_070--Hb_008062_040 Hb_001085_050 Hb_001085_050 Hb_000072_070--Hb_001085_050 Hb_000072_070--Hb_000575_030 Hb_006132_070 Hb_006132_070 Hb_004680_080--Hb_006132_070 Hb_004680_080--Hb_008062_040 Hb_004680_080--Hb_001085_050 Hb_000005_180 Hb_000005_180 Hb_004680_080--Hb_000005_180 Hb_002836_120 Hb_002836_120 Hb_004680_080--Hb_002836_120 Hb_004680_080--Hb_000575_030 Hb_000575_030--Hb_008062_040 Hb_003607_050 Hb_003607_050 Hb_000575_030--Hb_003607_050 Hb_000575_030--Hb_000317_490 Hb_004195_270 Hb_004195_270 Hb_000575_030--Hb_004195_270 Hb_000575_030--Hb_011316_100 Hb_000032_440 Hb_000032_440 Hb_000317_490--Hb_000032_440 Hb_002016_170 Hb_002016_170 Hb_000317_490--Hb_002016_170 Hb_002183_070 Hb_002183_070 Hb_000317_490--Hb_002183_070 Hb_000317_490--Hb_011316_100 Hb_000317_490--Hb_000072_070 Hb_035273_030 Hb_035273_030 Hb_011316_100--Hb_035273_030 Hb_007479_050 Hb_007479_050 Hb_011316_100--Hb_007479_050 Hb_011316_100--Hb_002183_070 Hb_001053_180 Hb_001053_180 Hb_011316_100--Hb_001053_180 Hb_001328_040 Hb_001328_040 Hb_011316_100--Hb_001328_040 Hb_008062_040--Hb_001085_050 Hb_008062_040--Hb_000317_490 Hb_008062_040--Hb_011316_100 Hb_000331_250 Hb_000331_250 Hb_008062_040--Hb_000331_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204748 0 0.0861763 0.0558166 0.0228154 0.0506279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.156311 0.0409786 0.0753144 0 0.0836962

CAGE analysis