Hb_011381_040

Information

Type -
Description -
Location Contig11381: 8069-12465
Sequence    

Annotation

kegg
ID csv:101229144
description uncharacterized LOC101229144
nr
ID XP_012076373.1
description PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
swissprot
ID Q9FVR6
description Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=2 SV=1
trembl
ID A0A067KNT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07045 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04133: 8047-12244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011381_040 0.0 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
2 Hb_003835_110 0.0650160054 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
3 Hb_006588_190 0.0758720921 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
4 Hb_000364_170 0.0792888798 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
5 Hb_002871_040 0.0829369185 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
6 Hb_000029_400 0.0995121801 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
7 Hb_002027_320 0.1000485584 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
8 Hb_000327_330 0.1009970223 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001799_160 0.1010776029 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_000163_260 0.1012050801 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
11 Hb_003687_080 0.1021758454 - - PREDICTED: casein kinase I-like [Jatropha curcas]
12 Hb_000800_020 0.1031338028 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
13 Hb_019654_050 0.104293426 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
14 Hb_006816_190 0.1075911864 - - calreticulin family protein [Populus trichocarpa]
15 Hb_000318_220 0.10788466 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005665_090 0.1095758146 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
17 Hb_000926_060 0.1135871334 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001160_110 0.113899955 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
19 Hb_001623_490 0.1148249267 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
20 Hb_002783_220 0.1156827092 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011381_040 Hb_011381_040 Hb_003835_110 Hb_003835_110 Hb_011381_040--Hb_003835_110 Hb_006588_190 Hb_006588_190 Hb_011381_040--Hb_006588_190 Hb_000364_170 Hb_000364_170 Hb_011381_040--Hb_000364_170 Hb_002871_040 Hb_002871_040 Hb_011381_040--Hb_002871_040 Hb_000029_400 Hb_000029_400 Hb_011381_040--Hb_000029_400 Hb_002027_320 Hb_002027_320 Hb_011381_040--Hb_002027_320 Hb_003835_110--Hb_002871_040 Hb_019654_050 Hb_019654_050 Hb_003835_110--Hb_019654_050 Hb_003835_110--Hb_002027_320 Hb_003835_110--Hb_006588_190 Hb_017193_010 Hb_017193_010 Hb_003835_110--Hb_017193_010 Hb_000327_330 Hb_000327_330 Hb_006588_190--Hb_000327_330 Hb_000800_020 Hb_000800_020 Hb_006588_190--Hb_000800_020 Hb_007217_010 Hb_007217_010 Hb_006588_190--Hb_007217_010 Hb_000163_260 Hb_000163_260 Hb_006588_190--Hb_000163_260 Hb_001009_140 Hb_001009_140 Hb_006588_190--Hb_001009_140 Hb_000057_110 Hb_000057_110 Hb_000364_170--Hb_000057_110 Hb_000200_300 Hb_000200_300 Hb_000364_170--Hb_000200_300 Hb_006775_120 Hb_006775_120 Hb_000364_170--Hb_006775_120 Hb_002783_220 Hb_002783_220 Hb_000364_170--Hb_002783_220 Hb_005754_040 Hb_005754_040 Hb_000364_170--Hb_005754_040 Hb_002871_040--Hb_017193_010 Hb_000620_020 Hb_000620_020 Hb_002871_040--Hb_000620_020 Hb_002627_040 Hb_002627_040 Hb_002871_040--Hb_002627_040 Hb_000579_080 Hb_000579_080 Hb_002871_040--Hb_000579_080 Hb_001504_010 Hb_001504_010 Hb_000029_400--Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_000029_400--Hb_007483_070 Hb_001882_010 Hb_001882_010 Hb_000029_400--Hb_001882_010 Hb_001053_190 Hb_001053_190 Hb_000029_400--Hb_001053_190 Hb_000029_400--Hb_000163_260 Hb_000926_060 Hb_000926_060 Hb_000029_400--Hb_000926_060 Hb_007263_010 Hb_007263_010 Hb_002027_320--Hb_007263_010 Hb_000392_450 Hb_000392_450 Hb_002027_320--Hb_000392_450 Hb_004994_080 Hb_004994_080 Hb_002027_320--Hb_004994_080 Hb_011386_050 Hb_011386_050 Hb_002027_320--Hb_011386_050 Hb_000181_060 Hb_000181_060 Hb_002027_320--Hb_000181_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.61294 12.5168 67.5577 34.6184 13.1558 9.32969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0782 14.5606 10.0276 15.5723 26.1209

CAGE analysis