Hb_011381_060

Information

Type -
Description -
Location Contig11381: 20826-25976
Sequence    

Annotation

kegg
ID brp:103842229
description ADP-ribosylation factor 1
nr
ID XP_012076375.1
description PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
swissprot
ID Q96361
description ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3
trembl
ID A0A067KB70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07047 PE=3 SV=1
Gene Ontology
ID GO:0005634
description adp-ribosylation factor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04138: 20978-25850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011381_060 0.0 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
2 Hb_007154_020 0.0637533702 - - -
3 Hb_145880_030 0.0742571474 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
4 Hb_010407_040 0.075167039 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
5 Hb_002374_170 0.0755902263 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
6 Hb_002045_040 0.0763187901 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
7 Hb_028841_030 0.0775748016 - - -
8 Hb_000251_070 0.0782370401 - - hypothetical protein L484_010641 [Morus notabilis]
9 Hb_003018_120 0.0795974655 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
10 Hb_003363_110 0.0821008178 - - protein with unknown function [Ricinus communis]
11 Hb_002868_010 0.0835437847 - - 60S ribosomal protein L30, putative [Ricinus communis]
12 Hb_003939_080 0.0861738447 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000023_230 0.086383116 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
14 Hb_002518_050 0.0870999847 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
15 Hb_003607_150 0.0873304642 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
16 Hb_000494_020 0.0886731757 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
17 Hb_000684_090 0.090447579 transcription factor TF Family: S1Fa-like -
18 Hb_013405_060 0.0908487362 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
19 Hb_010921_010 0.0929688296 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
20 Hb_000454_050 0.093395108 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]

Gene co-expression network

sample Hb_011381_060 Hb_011381_060 Hb_007154_020 Hb_007154_020 Hb_011381_060--Hb_007154_020 Hb_145880_030 Hb_145880_030 Hb_011381_060--Hb_145880_030 Hb_010407_040 Hb_010407_040 Hb_011381_060--Hb_010407_040 Hb_002374_170 Hb_002374_170 Hb_011381_060--Hb_002374_170 Hb_002045_040 Hb_002045_040 Hb_011381_060--Hb_002045_040 Hb_028841_030 Hb_028841_030 Hb_011381_060--Hb_028841_030 Hb_010661_030 Hb_010661_030 Hb_007154_020--Hb_010661_030 Hb_001512_060 Hb_001512_060 Hb_007154_020--Hb_001512_060 Hb_005186_050 Hb_005186_050 Hb_007154_020--Hb_005186_050 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_010921_010 Hb_010921_010 Hb_007154_020--Hb_010921_010 Hb_145880_030--Hb_010407_040 Hb_007778_030 Hb_007778_030 Hb_145880_030--Hb_007778_030 Hb_000141_040 Hb_000141_040 Hb_145880_030--Hb_000141_040 Hb_001662_070 Hb_001662_070 Hb_145880_030--Hb_001662_070 Hb_165132_010 Hb_165132_010 Hb_145880_030--Hb_165132_010 Hb_023226_040 Hb_023226_040 Hb_145880_030--Hb_023226_040 Hb_000494_020 Hb_000494_020 Hb_010407_040--Hb_000494_020 Hb_000163_160 Hb_000163_160 Hb_010407_040--Hb_000163_160 Hb_003363_110 Hb_003363_110 Hb_010407_040--Hb_003363_110 Hb_010407_040--Hb_007778_030 Hb_000000_160 Hb_000000_160 Hb_010407_040--Hb_000000_160 Hb_001459_080 Hb_001459_080 Hb_002374_170--Hb_001459_080 Hb_004787_060 Hb_004787_060 Hb_002374_170--Hb_004787_060 Hb_168878_010 Hb_168878_010 Hb_002374_170--Hb_168878_010 Hb_002811_260 Hb_002811_260 Hb_002374_170--Hb_002811_260 Hb_002374_170--Hb_028841_030 Hb_000805_120 Hb_000805_120 Hb_002045_040--Hb_000805_120 Hb_002045_040--Hb_145880_030 Hb_000251_070 Hb_000251_070 Hb_002045_040--Hb_000251_070 Hb_002045_040--Hb_010407_040 Hb_002045_040--Hb_002374_170 Hb_028841_030--Hb_003363_110 Hb_028841_030--Hb_005186_050 Hb_003607_150 Hb_003607_150 Hb_028841_030--Hb_003607_150 Hb_028841_030--Hb_007154_020 Hb_003069_010 Hb_003069_010 Hb_028841_030--Hb_003069_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.2457 16.2322 34.5622 14.6563 41.0643 35.2742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.4702 80.8123 26.9644 14.8162 9.46802

CAGE analysis