Hb_011381_080

Information

Type -
Description -
Location Contig11381: 31568-37991
Sequence    

Annotation

kegg
ID rcu:RCOM_0920170
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012076377.1
description PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
swissprot
ID Q8RXV3
description Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1
trembl
ID A0A067KEP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07049 PE=3 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 59

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04143: 31353-37461 , PASA_asmbl_04144: 32671-32881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011381_080 0.0 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
2 Hb_000120_020 0.0582526814 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
3 Hb_000254_050 0.0733515535 - - hypothetical protein VITISV_010510 [Vitis vinifera]
4 Hb_004837_160 0.0797823553 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
5 Hb_028515_010 0.0827155441 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
6 Hb_002110_200 0.0848664534 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_012423_030 0.0860312411 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000016_160 0.087267042 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
9 Hb_000483_390 0.0873606402 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
10 Hb_001222_080 0.0925803488 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
11 Hb_000436_130 0.0944300186 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
12 Hb_000046_350 0.0951251086 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000108_190 0.0976061833 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]
14 Hb_002742_090 0.0983445191 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
15 Hb_005488_200 0.1010324941 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
16 Hb_000327_060 0.1025272768 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
17 Hb_005568_120 0.1033381362 - - Prephenate dehydratase [Hevea brasiliensis]
18 Hb_114310_080 0.1042476389 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000072_180 0.1043344447 - - PREDICTED: EVI5-like protein [Jatropha curcas]
20 Hb_003697_040 0.1046805085 - - hypothetical protein B456_005G209600 [Gossypium raimondii]

Gene co-expression network

sample Hb_011381_080 Hb_011381_080 Hb_000120_020 Hb_000120_020 Hb_011381_080--Hb_000120_020 Hb_000254_050 Hb_000254_050 Hb_011381_080--Hb_000254_050 Hb_004837_160 Hb_004837_160 Hb_011381_080--Hb_004837_160 Hb_028515_010 Hb_028515_010 Hb_011381_080--Hb_028515_010 Hb_002110_200 Hb_002110_200 Hb_011381_080--Hb_002110_200 Hb_012423_030 Hb_012423_030 Hb_011381_080--Hb_012423_030 Hb_002742_090 Hb_002742_090 Hb_000120_020--Hb_002742_090 Hb_000016_160 Hb_000016_160 Hb_000120_020--Hb_000016_160 Hb_000120_020--Hb_028515_010 Hb_000108_190 Hb_000108_190 Hb_000120_020--Hb_000108_190 Hb_000120_020--Hb_000254_050 Hb_000254_050--Hb_002110_200 Hb_001512_080 Hb_001512_080 Hb_000254_050--Hb_001512_080 Hb_000016_080 Hb_000016_080 Hb_000254_050--Hb_000016_080 Hb_000789_230 Hb_000789_230 Hb_000254_050--Hb_000789_230 Hb_000571_020 Hb_000571_020 Hb_000254_050--Hb_000571_020 Hb_005269_080 Hb_005269_080 Hb_000254_050--Hb_005269_080 Hb_003349_090 Hb_003349_090 Hb_004837_160--Hb_003349_090 Hb_004837_160--Hb_028515_010 Hb_000373_130 Hb_000373_130 Hb_004837_160--Hb_000373_130 Hb_002007_210 Hb_002007_210 Hb_004837_160--Hb_002007_210 Hb_003697_040 Hb_003697_040 Hb_004837_160--Hb_003697_040 Hb_001222_080 Hb_001222_080 Hb_004837_160--Hb_001222_080 Hb_005568_120 Hb_005568_120 Hb_028515_010--Hb_005568_120 Hb_028515_010--Hb_000373_130 Hb_028515_010--Hb_003349_090 Hb_114310_080 Hb_114310_080 Hb_028515_010--Hb_114310_080 Hb_000985_060 Hb_000985_060 Hb_028515_010--Hb_000985_060 Hb_002110_200--Hb_001512_080 Hb_002110_200--Hb_000789_230 Hb_001776_160 Hb_001776_160 Hb_002110_200--Hb_001776_160 Hb_027654_050 Hb_027654_050 Hb_002110_200--Hb_027654_050 Hb_000453_120 Hb_000453_120 Hb_002110_200--Hb_000453_120 Hb_000107_160 Hb_000107_160 Hb_012423_030--Hb_000107_160 Hb_008453_030 Hb_008453_030 Hb_012423_030--Hb_008453_030 Hb_000327_060 Hb_000327_060 Hb_012423_030--Hb_000327_060 Hb_004324_270 Hb_004324_270 Hb_012423_030--Hb_004324_270 Hb_029879_130 Hb_029879_130 Hb_012423_030--Hb_029879_130 Hb_012675_050 Hb_012675_050 Hb_012423_030--Hb_012675_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.90023 10.8505 10.151 23.4017 13.473 14.2913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0223 45.8326 34.8403 14.325 20.5408

CAGE analysis