Hb_011381_090

Information

Type -
Description -
Location Contig11381: 40331-44379
Sequence    

Annotation

kegg
ID rcu:RCOM_0920180
description Protein ABC1, mitochondrial precursor, putative
nr
ID XP_002515384.1
description Protein ABC1, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNR5
description Protein ABC1, mitochondrial, putative OS=Ricinus communis GN=RCOM_0920180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011381_090 0.0 - - Protein ABC1, mitochondrial precursor, putative [Ricinus communis]
2 Hb_000164_210 0.2279784123 - - glutaredoxin-1, grx1, putative [Ricinus communis]
3 Hb_063907_010 0.2503338461 - - -
4 Hb_001195_240 0.2557867676 transcription factor TF Family: MYB-related PREDICTED: protein RADIALIS-like 3 [Jatropha curcas]
5 Hb_002820_130 0.2633332936 - - -
6 Hb_008536_030 0.2634885477 - - hypothetical protein POPTR_0005s08290g [Populus trichocarpa]
7 Hb_000237_010 0.2653861004 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
8 Hb_006816_110 0.2674052329 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
9 Hb_010050_010 0.2687469076 - - -
10 Hb_116360_010 0.2706838375 - - -
11 Hb_004925_030 0.2735929202 - - EXORDIUM like 1 [Theobroma cacao]
12 Hb_000959_150 0.2770030634 - - PREDICTED: uncharacterized protein LOC104879927 [Vitis vinifera]
13 Hb_003988_020 0.2776132859 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
14 Hb_004330_060 0.2778993336 - - hypothetical protein POPTR_0011s01530g [Populus trichocarpa]
15 Hb_000042_350 0.2789644261 - - hypothetical protein JCGZ_00710 [Jatropha curcas]
16 Hb_001396_270 0.2821167793 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
17 Hb_000320_250 0.2840068482 - - hypothetical protein POPTR_0021s00440g [Populus trichocarpa]
18 Hb_005723_060 0.2873149847 - - -
19 Hb_003494_100 0.2882137979 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 1 [Theobroma cacao]
20 Hb_005914_220 0.2884998724 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011381_090 Hb_011381_090 Hb_000164_210 Hb_000164_210 Hb_011381_090--Hb_000164_210 Hb_063907_010 Hb_063907_010 Hb_011381_090--Hb_063907_010 Hb_001195_240 Hb_001195_240 Hb_011381_090--Hb_001195_240 Hb_002820_130 Hb_002820_130 Hb_011381_090--Hb_002820_130 Hb_008536_030 Hb_008536_030 Hb_011381_090--Hb_008536_030 Hb_000237_010 Hb_000237_010 Hb_011381_090--Hb_000237_010 Hb_003988_020 Hb_003988_020 Hb_000164_210--Hb_003988_020 Hb_000579_160 Hb_000579_160 Hb_000164_210--Hb_000579_160 Hb_109187_010 Hb_109187_010 Hb_000164_210--Hb_109187_010 Hb_041188_010 Hb_041188_010 Hb_000164_210--Hb_041188_010 Hb_025526_110 Hb_025526_110 Hb_000164_210--Hb_025526_110 Hb_000589_080 Hb_000589_080 Hb_000164_210--Hb_000589_080 Hb_036693_020 Hb_036693_020 Hb_063907_010--Hb_036693_020 Hb_003050_240 Hb_003050_240 Hb_063907_010--Hb_003050_240 Hb_063907_010--Hb_000579_160 Hb_003902_080 Hb_003902_080 Hb_063907_010--Hb_003902_080 Hb_063907_010--Hb_109187_010 Hb_001195_240--Hb_000164_210 Hb_004330_060 Hb_004330_060 Hb_001195_240--Hb_004330_060 Hb_005656_020 Hb_005656_020 Hb_001195_240--Hb_005656_020 Hb_001424_050 Hb_001424_050 Hb_001195_240--Hb_001424_050 Hb_175976_020 Hb_175976_020 Hb_001195_240--Hb_175976_020 Hb_034507_020 Hb_034507_020 Hb_001195_240--Hb_034507_020 Hb_097783_010 Hb_097783_010 Hb_002820_130--Hb_097783_010 Hb_007545_200 Hb_007545_200 Hb_002820_130--Hb_007545_200 Hb_104169_010 Hb_104169_010 Hb_002820_130--Hb_104169_010 Hb_072290_010 Hb_072290_010 Hb_002820_130--Hb_072290_010 Hb_133648_010 Hb_133648_010 Hb_002820_130--Hb_133648_010 Hb_003582_010 Hb_003582_010 Hb_008536_030--Hb_003582_010 Hb_000959_150 Hb_000959_150 Hb_008536_030--Hb_000959_150 Hb_059226_020 Hb_059226_020 Hb_008536_030--Hb_059226_020 Hb_022597_010 Hb_022597_010 Hb_008536_030--Hb_022597_010 Hb_080068_010 Hb_080068_010 Hb_008536_030--Hb_080068_010 Hb_002054_090 Hb_002054_090 Hb_008536_030--Hb_002054_090 Hb_010050_010 Hb_010050_010 Hb_000237_010--Hb_010050_010 Hb_007477_020 Hb_007477_020 Hb_000237_010--Hb_007477_020 Hb_003494_100 Hb_003494_100 Hb_000237_010--Hb_003494_100 Hb_140024_010 Hb_140024_010 Hb_000237_010--Hb_140024_010 Hb_002368_120 Hb_002368_120 Hb_000237_010--Hb_002368_120 Hb_106677_010 Hb_106677_010 Hb_000237_010--Hb_106677_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118285 0.024796 0 0.897458 0.0296984 0.0523054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.108313 0

CAGE analysis