Hb_011386_010

Information

Type -
Description -
Location Contig11386: 4316-5086
Sequence    

Annotation

kegg
ID rcu:RCOM_1402800
description mitochondrial carrier protein, putative
nr
ID XP_002516353.1
description mitochondrial carrier protein, putative [Ricinus communis]
swissprot
ID Q55DY8
description Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=3 SV=1
trembl
ID B9RRI4
description Mitochondrial carrier protein, putative OS=Ricinus communis GN=RCOM_1402800 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial substrate carrier family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011386_010 0.0 - - mitochondrial carrier protein, putative [Ricinus communis]
2 Hb_005054_110 0.0385698512 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
3 Hb_002078_350 0.0460271207 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
4 Hb_000329_710 0.0475892094 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
5 Hb_002518_260 0.0495679602 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
6 Hb_156279_020 0.0575582256 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
7 Hb_000792_010 0.0590358673 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
8 Hb_002450_020 0.0605033312 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
9 Hb_009486_140 0.0611240377 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
10 Hb_000078_120 0.0624087854 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
11 Hb_001304_110 0.0625720965 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
12 Hb_019863_070 0.0633973597 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
13 Hb_007479_040 0.064628926 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003680_120 0.0649481321 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
15 Hb_000696_330 0.064957231 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
16 Hb_000041_110 0.0650529225 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
17 Hb_004567_090 0.0672503491 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
18 Hb_004143_060 0.0684166686 - - DNA binding protein, putative [Ricinus communis]
19 Hb_015934_040 0.0684278263 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
20 Hb_000111_290 0.0699221083 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]

Gene co-expression network

sample Hb_011386_010 Hb_011386_010 Hb_005054_110 Hb_005054_110 Hb_011386_010--Hb_005054_110 Hb_002078_350 Hb_002078_350 Hb_011386_010--Hb_002078_350 Hb_000329_710 Hb_000329_710 Hb_011386_010--Hb_000329_710 Hb_002518_260 Hb_002518_260 Hb_011386_010--Hb_002518_260 Hb_156279_020 Hb_156279_020 Hb_011386_010--Hb_156279_020 Hb_000792_010 Hb_000792_010 Hb_011386_010--Hb_000792_010 Hb_000049_210 Hb_000049_210 Hb_005054_110--Hb_000049_210 Hb_000260_350 Hb_000260_350 Hb_005054_110--Hb_000260_350 Hb_149985_010 Hb_149985_010 Hb_005054_110--Hb_149985_010 Hb_019863_070 Hb_019863_070 Hb_005054_110--Hb_019863_070 Hb_001304_110 Hb_001304_110 Hb_005054_110--Hb_001304_110 Hb_002078_350--Hb_156279_020 Hb_000373_070 Hb_000373_070 Hb_002078_350--Hb_000373_070 Hb_006831_140 Hb_006831_140 Hb_002078_350--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002078_350--Hb_001470_030 Hb_000035_180 Hb_000035_180 Hb_002078_350--Hb_000035_180 Hb_000329_710--Hb_000792_010 Hb_001004_060 Hb_001004_060 Hb_000329_710--Hb_001004_060 Hb_000329_710--Hb_002518_260 Hb_009486_140 Hb_009486_140 Hb_000329_710--Hb_009486_140 Hb_000041_110 Hb_000041_110 Hb_000329_710--Hb_000041_110 Hb_002518_260--Hb_000041_110 Hb_002518_260--Hb_000792_010 Hb_000028_480 Hb_000028_480 Hb_002518_260--Hb_000028_480 Hb_002518_260--Hb_009486_140 Hb_000331_260 Hb_000331_260 Hb_156279_020--Hb_000331_260 Hb_005269_070 Hb_005269_070 Hb_156279_020--Hb_005269_070 Hb_000331_550 Hb_000331_550 Hb_156279_020--Hb_000331_550 Hb_000684_470 Hb_000684_470 Hb_156279_020--Hb_000684_470 Hb_156279_020--Hb_000035_180 Hb_000792_010--Hb_000028_480 Hb_003411_040 Hb_003411_040 Hb_000792_010--Hb_003411_040 Hb_000792_010--Hb_001004_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.61557 9.48716 6.74345 8.60155 7.10206 10.419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.71281 12.4306 11.5554 10.3925 11.1473

CAGE analysis