Hb_011386_020

Information

Type -
Description -
Location Contig11386: 17760-20681
Sequence    

Annotation

kegg
ID -
description -
nr
ID CBI18114.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A0A0D3C306
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial substrate carrier family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011386_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_003544_010 0.094158248 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_003467_030 0.1007442468 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
4 Hb_003994_110 0.1107679278 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
5 Hb_006274_050 0.1115997137 - - hypothetical protein VITISV_022618 [Vitis vinifera]
6 Hb_000337_050 0.1194389719 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
7 Hb_000019_200 0.1294495108 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
8 Hb_005282_020 0.1303176156 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
9 Hb_002304_070 0.1318200158 - - -
10 Hb_001824_090 0.1328219793 - - -
11 Hb_001435_030 0.1346199083 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
12 Hb_007747_210 0.135383217 - - unnamed protein product [Vitis vinifera]
13 Hb_000608_170 0.137630839 - - F23N19.4 [Arabidopsis thaliana]
14 Hb_000329_290 0.1395927902 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
15 Hb_002078_340 0.1404697963 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
16 Hb_001138_060 0.1411504029 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
17 Hb_000482_040 0.1413865545 - - Protein YME1, putative [Ricinus communis]
18 Hb_008725_170 0.1416316235 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
19 Hb_007023_030 0.1419732522 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
20 Hb_000204_120 0.142541798 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]

Gene co-expression network

sample Hb_011386_020 Hb_011386_020 Hb_003544_010 Hb_003544_010 Hb_011386_020--Hb_003544_010 Hb_003467_030 Hb_003467_030 Hb_011386_020--Hb_003467_030 Hb_003994_110 Hb_003994_110 Hb_011386_020--Hb_003994_110 Hb_006274_050 Hb_006274_050 Hb_011386_020--Hb_006274_050 Hb_000337_050 Hb_000337_050 Hb_011386_020--Hb_000337_050 Hb_000019_200 Hb_000019_200 Hb_011386_020--Hb_000019_200 Hb_003544_010--Hb_003994_110 Hb_005282_020 Hb_005282_020 Hb_003544_010--Hb_005282_020 Hb_001824_090 Hb_001824_090 Hb_003544_010--Hb_001824_090 Hb_000012_160 Hb_000012_160 Hb_003544_010--Hb_000012_160 Hb_003475_020 Hb_003475_020 Hb_003544_010--Hb_003475_020 Hb_007023_030 Hb_007023_030 Hb_003467_030--Hb_007023_030 Hb_002768_060 Hb_002768_060 Hb_003467_030--Hb_002768_060 Hb_000204_120 Hb_000204_120 Hb_003467_030--Hb_000204_120 Hb_001435_030 Hb_001435_030 Hb_003467_030--Hb_001435_030 Hb_003467_030--Hb_003994_110 Hb_003994_110--Hb_003475_020 Hb_000613_110 Hb_000613_110 Hb_003994_110--Hb_000613_110 Hb_032920_050 Hb_032920_050 Hb_003994_110--Hb_032920_050 Hb_003994_110--Hb_001824_090 Hb_003106_190 Hb_003106_190 Hb_003994_110--Hb_003106_190 Hb_000365_240 Hb_000365_240 Hb_006274_050--Hb_000365_240 Hb_003089_020 Hb_003089_020 Hb_006274_050--Hb_003089_020 Hb_000922_030 Hb_000922_030 Hb_006274_050--Hb_000922_030 Hb_006274_050--Hb_003467_030 Hb_006274_050--Hb_003994_110 Hb_006274_050--Hb_001435_030 Hb_000289_110 Hb_000289_110 Hb_000337_050--Hb_000289_110 Hb_018133_090 Hb_018133_090 Hb_000337_050--Hb_018133_090 Hb_003086_080 Hb_003086_080 Hb_000337_050--Hb_003086_080 Hb_001366_180 Hb_001366_180 Hb_000337_050--Hb_001366_180 Hb_005144_050 Hb_005144_050 Hb_000337_050--Hb_005144_050 Hb_003020_260 Hb_003020_260 Hb_000337_050--Hb_003020_260 Hb_002748_020 Hb_002748_020 Hb_000019_200--Hb_002748_020 Hb_001629_030 Hb_001629_030 Hb_000019_200--Hb_001629_030 Hb_165928_040 Hb_165928_040 Hb_000019_200--Hb_165928_040 Hb_000046_540 Hb_000046_540 Hb_000019_200--Hb_000046_540 Hb_000189_550 Hb_000189_550 Hb_000019_200--Hb_000189_550 Hb_006277_010 Hb_006277_010 Hb_000019_200--Hb_006277_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.53155 1.88168 2.94627 3.12047 1.5489 4.83706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.9602 4.12955 7.5463 5.59314 12.7279

CAGE analysis