Hb_011386_040

Information

Type -
Description -
Location Contig11386: 24698-25510
Sequence    

Annotation

kegg
ID vvi:100251809
description uncharacterized LOC100251809
nr
ID XP_012078628.1
description PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LMW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17356 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04162: 24695-25535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011386_040 0.0 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
2 Hb_050847_020 0.0665536919 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_032202_110 0.0693960842 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
4 Hb_000771_180 0.0724436167 - - polypyrimidine tract binding protein, putative [Ricinus communis]
5 Hb_000140_080 0.0730805246 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
6 Hb_002045_150 0.0734377631 - - histone acetyltransferase gcn5, putative [Ricinus communis]
7 Hb_000136_090 0.0760067042 - - programmed cell death protein, putative [Ricinus communis]
8 Hb_000300_360 0.0760949243 - - PREDICTED: exosome component 10 [Jatropha curcas]
9 Hb_000394_190 0.0767894389 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
10 Hb_000224_060 0.0787794811 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
11 Hb_000406_240 0.0807235085 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
12 Hb_002043_090 0.0812252643 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
13 Hb_002783_310 0.0835494761 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
14 Hb_033095_020 0.0854923885 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008554_120 0.0895188634 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
16 Hb_007982_070 0.0907926899 - - PREDICTED: protein CPR-5 [Jatropha curcas]
17 Hb_006355_010 0.0932999348 - - PREDICTED: protein NLRC3 [Jatropha curcas]
18 Hb_000059_140 0.0934876209 - - rnase h, putative [Ricinus communis]
19 Hb_000179_030 0.0937742176 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
20 Hb_140049_030 0.0939662635 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]

Gene co-expression network

sample Hb_011386_040 Hb_011386_040 Hb_050847_020 Hb_050847_020 Hb_011386_040--Hb_050847_020 Hb_032202_110 Hb_032202_110 Hb_011386_040--Hb_032202_110 Hb_000771_180 Hb_000771_180 Hb_011386_040--Hb_000771_180 Hb_000140_080 Hb_000140_080 Hb_011386_040--Hb_000140_080 Hb_002045_150 Hb_002045_150 Hb_011386_040--Hb_002045_150 Hb_000136_090 Hb_000136_090 Hb_011386_040--Hb_000136_090 Hb_002783_310 Hb_002783_310 Hb_050847_020--Hb_002783_310 Hb_050847_020--Hb_000771_180 Hb_050847_020--Hb_002045_150 Hb_140049_030 Hb_140049_030 Hb_050847_020--Hb_140049_030 Hb_050847_020--Hb_000136_090 Hb_010738_010 Hb_010738_010 Hb_032202_110--Hb_010738_010 Hb_111198_010 Hb_111198_010 Hb_032202_110--Hb_111198_010 Hb_000300_360 Hb_000300_360 Hb_032202_110--Hb_000300_360 Hb_007982_070 Hb_007982_070 Hb_032202_110--Hb_007982_070 Hb_032202_110--Hb_000771_180 Hb_000771_180--Hb_002783_310 Hb_000160_350 Hb_000160_350 Hb_000771_180--Hb_000160_350 Hb_000771_180--Hb_140049_030 Hb_000334_270 Hb_000334_270 Hb_000771_180--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_000771_180--Hb_000664_070 Hb_000224_060 Hb_000224_060 Hb_000140_080--Hb_000224_060 Hb_033095_020 Hb_033095_020 Hb_000140_080--Hb_033095_020 Hb_000261_220 Hb_000261_220 Hb_000140_080--Hb_000261_220 Hb_031527_020 Hb_031527_020 Hb_000140_080--Hb_031527_020 Hb_000152_340 Hb_000152_340 Hb_000140_080--Hb_000152_340 Hb_002157_260 Hb_002157_260 Hb_002045_150--Hb_002157_260 Hb_002045_150--Hb_140049_030 Hb_002045_150--Hb_000771_180 Hb_002045_150--Hb_000300_360 Hb_006452_160 Hb_006452_160 Hb_002045_150--Hb_006452_160 Hb_012180_050 Hb_012180_050 Hb_000136_090--Hb_012180_050 Hb_000363_130 Hb_000363_130 Hb_000136_090--Hb_000363_130 Hb_001028_070 Hb_001028_070 Hb_000136_090--Hb_001028_070 Hb_000136_090--Hb_000300_360 Hb_006252_020 Hb_006252_020 Hb_000136_090--Hb_006252_020 Hb_000120_610 Hb_000120_610 Hb_000136_090--Hb_000120_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.2647 34.9901 22.4151 11.4323 37.4816 41.5103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8707 22.5574 12.1706 21.5983 6.68391

CAGE analysis