Hb_011432_010

Information

Type -
Description -
Location Contig11432: 2391-3254
Sequence    

Annotation

kegg
ID pop:POPTR_0007s00810g
description POPTRDRAFT_562126; hypothetical protein
nr
ID KDP42839.1
description hypothetical protein JCGZ_23781 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LFG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23781 PE=4 SV=1
Gene Ontology
ID GO:0005488
description probable receptor-like protein kinase at1g67000 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011432_010 0.0 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
2 Hb_002973_130 0.0455669923 - - PREDICTED: uncharacterized protein LOC104609908 [Nelumbo nucifera]
3 Hb_037519_010 0.0670956302 - - PREDICTED: auxin-induced in root cultures protein 12-like [Jatropha curcas]
4 Hb_011358_010 0.0829232525 - - -
5 Hb_145080_010 0.0837573188 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
6 Hb_112791_030 0.0882365377 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
7 Hb_002876_280 0.0943314841 - - hypothetical protein RCOM_0686540 [Ricinus communis]
8 Hb_000856_210 0.1573330052 - - nitrate transporter, putative [Ricinus communis]
9 Hb_006351_120 0.1574337912 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
10 Hb_001277_380 0.1616148706 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]
11 Hb_007295_020 0.1626039594 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
12 Hb_016564_050 0.1626844041 - - -
13 Hb_001355_060 0.1729186848 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
14 Hb_003858_060 0.1774205853 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
15 Hb_000207_240 0.1859230378 - - hypothetical protein RCOM_0686540 [Ricinus communis]
16 Hb_002631_110 0.1867496747 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
17 Hb_094437_020 0.1877298389 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
18 Hb_019925_020 0.1894828029 - - electron carrier, putative [Ricinus communis]
19 Hb_125181_010 0.1895714695 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
20 Hb_038833_010 0.1909572044 - - polyprotein [Ananas comosus]

Gene co-expression network

sample Hb_011432_010 Hb_011432_010 Hb_002973_130 Hb_002973_130 Hb_011432_010--Hb_002973_130 Hb_037519_010 Hb_037519_010 Hb_011432_010--Hb_037519_010 Hb_011358_010 Hb_011358_010 Hb_011432_010--Hb_011358_010 Hb_145080_010 Hb_145080_010 Hb_011432_010--Hb_145080_010 Hb_112791_030 Hb_112791_030 Hb_011432_010--Hb_112791_030 Hb_002876_280 Hb_002876_280 Hb_011432_010--Hb_002876_280 Hb_002973_130--Hb_037519_010 Hb_002973_130--Hb_011358_010 Hb_002973_130--Hb_145080_010 Hb_002973_130--Hb_112791_030 Hb_002973_130--Hb_002876_280 Hb_037519_010--Hb_011358_010 Hb_037519_010--Hb_145080_010 Hb_037519_010--Hb_112791_030 Hb_037519_010--Hb_002876_280 Hb_011358_010--Hb_112791_030 Hb_011358_010--Hb_145080_010 Hb_000193_090 Hb_000193_090 Hb_011358_010--Hb_000193_090 Hb_145080_010--Hb_112791_030 Hb_007295_020 Hb_007295_020 Hb_145080_010--Hb_007295_020 Hb_112791_030--Hb_007295_020 Hb_003858_060 Hb_003858_060 Hb_002876_280--Hb_003858_060 Hb_000856_210 Hb_000856_210 Hb_002876_280--Hb_000856_210 Hb_002876_280--Hb_145080_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0567451 0 0.0593443 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0248598 0.121399

CAGE analysis