Hb_011433_010

Information

Type -
Description -
Location Contig11433: 7037-9252
Sequence    

Annotation

kegg
ID cic:CICLE_v10025302mg
description hypothetical protein
nr
ID XP_011033018.1
description PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
swissprot
ID Q9SSM2
description (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1
trembl
ID V4S0T4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025302mg PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011433_010 0.0 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
2 Hb_005797_020 0.0184058727 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
3 Hb_014361_160 0.0192634706 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
4 Hb_003392_060 0.0264612045 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
5 Hb_000414_040 0.0319011269 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
6 Hb_171810_030 0.0339547765 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
7 Hb_000053_010 0.0374178506 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
8 Hb_003605_170 0.0416975996 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
9 Hb_002434_040 0.04178654 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
10 Hb_015807_120 0.0426682524 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
11 Hb_003836_040 0.0437662338 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
12 Hb_000174_120 0.0446975131 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
13 Hb_023313_050 0.0479166521 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
14 Hb_071557_010 0.0481727153 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
15 Hb_000210_020 0.0495714658 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
16 Hb_000977_250 0.0532870513 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
17 Hb_009692_050 0.0554841235 - - -
18 Hb_040323_010 0.0560839197 - - -
19 Hb_000740_010 0.0588623565 - - cytochrome P450, putative [Ricinus communis]
20 Hb_002284_290 0.0619364813 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_011433_010 Hb_011433_010 Hb_005797_020 Hb_005797_020 Hb_011433_010--Hb_005797_020 Hb_014361_160 Hb_014361_160 Hb_011433_010--Hb_014361_160 Hb_003392_060 Hb_003392_060 Hb_011433_010--Hb_003392_060 Hb_000414_040 Hb_000414_040 Hb_011433_010--Hb_000414_040 Hb_171810_030 Hb_171810_030 Hb_011433_010--Hb_171810_030 Hb_000053_010 Hb_000053_010 Hb_011433_010--Hb_000053_010 Hb_005797_020--Hb_000414_040 Hb_000174_120 Hb_000174_120 Hb_005797_020--Hb_000174_120 Hb_003836_040 Hb_003836_040 Hb_005797_020--Hb_003836_040 Hb_005797_020--Hb_014361_160 Hb_009692_050 Hb_009692_050 Hb_005797_020--Hb_009692_050 Hb_014361_160--Hb_171810_030 Hb_014361_160--Hb_000053_010 Hb_002434_040 Hb_002434_040 Hb_014361_160--Hb_002434_040 Hb_014361_160--Hb_003392_060 Hb_023313_050 Hb_023313_050 Hb_014361_160--Hb_023313_050 Hb_071557_010 Hb_071557_010 Hb_003392_060--Hb_071557_010 Hb_003392_060--Hb_171810_030 Hb_015807_120 Hb_015807_120 Hb_003392_060--Hb_015807_120 Hb_000740_010 Hb_000740_010 Hb_003392_060--Hb_000740_010 Hb_000414_040--Hb_000174_120 Hb_001433_210 Hb_001433_210 Hb_000414_040--Hb_001433_210 Hb_000414_040--Hb_009692_050 Hb_000414_040--Hb_003836_040 Hb_040323_010 Hb_040323_010 Hb_171810_030--Hb_040323_010 Hb_171810_030--Hb_002434_040 Hb_171810_030--Hb_000053_010 Hb_171810_030--Hb_023313_050 Hb_000053_010--Hb_002434_040 Hb_000053_010--Hb_023313_050 Hb_000977_250 Hb_000977_250 Hb_000053_010--Hb_000977_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0593368 0.00935709 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0481927

CAGE analysis