Hb_011440_010

Information

Type -
Description -
Location Contig11440: 435-6861
Sequence    

Annotation

kegg
ID pxb:103942759
description metalloendoproteinase 1-like
nr
ID XP_009351242.1
description PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID M5XKQ8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb025548mg PE=4 SV=1
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011440_010 0.0 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
2 Hb_001300_140 0.0687534812 - - -
3 Hb_123560_020 0.0897784154 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
4 Hb_009150_060 0.0920262559 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
5 Hb_005168_030 0.0947745058 - - unknown [Zea mays]
6 Hb_000753_180 0.1071371555 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
7 Hb_001358_120 0.1080539335 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
8 Hb_000844_090 0.1083439844 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
9 Hb_005333_210 0.1169076476 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
10 Hb_106321_010 0.1202111038 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
11 Hb_004586_110 0.1204902613 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_000836_260 0.1263961416 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_001345_010 0.1303778685 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
14 Hb_001366_050 0.1306741205 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2 [Populus euphratica]
15 Hb_000336_280 0.1310726768 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
16 Hb_009296_060 0.1334453876 - - glutathione s-transferase, putative [Ricinus communis]
17 Hb_000215_130 0.1344742844 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
18 Hb_005614_030 0.1350456787 - - PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]
19 Hb_009486_120 0.1363260132 - - hypothetical protein PRUPE_ppa004149mg [Prunus persica]
20 Hb_001186_120 0.1364427182 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_011440_010 Hb_011440_010 Hb_001300_140 Hb_001300_140 Hb_011440_010--Hb_001300_140 Hb_123560_020 Hb_123560_020 Hb_011440_010--Hb_123560_020 Hb_009150_060 Hb_009150_060 Hb_011440_010--Hb_009150_060 Hb_005168_030 Hb_005168_030 Hb_011440_010--Hb_005168_030 Hb_000753_180 Hb_000753_180 Hb_011440_010--Hb_000753_180 Hb_001358_120 Hb_001358_120 Hb_011440_010--Hb_001358_120 Hb_001300_140--Hb_009150_060 Hb_000836_260 Hb_000836_260 Hb_001300_140--Hb_000836_260 Hb_001300_140--Hb_000753_180 Hb_005333_210 Hb_005333_210 Hb_001300_140--Hb_005333_210 Hb_000844_090 Hb_000844_090 Hb_001300_140--Hb_000844_090 Hb_123560_020--Hb_005168_030 Hb_106321_010 Hb_106321_010 Hb_123560_020--Hb_106321_010 Hb_009486_120 Hb_009486_120 Hb_123560_020--Hb_009486_120 Hb_000336_280 Hb_000336_280 Hb_123560_020--Hb_000336_280 Hb_001186_120 Hb_001186_120 Hb_123560_020--Hb_001186_120 Hb_004010_090 Hb_004010_090 Hb_009150_060--Hb_004010_090 Hb_009150_060--Hb_000836_260 Hb_004128_090 Hb_004128_090 Hb_009150_060--Hb_004128_090 Hb_010839_010 Hb_010839_010 Hb_009150_060--Hb_010839_010 Hb_005168_030--Hb_106321_010 Hb_004586_110 Hb_004586_110 Hb_005168_030--Hb_004586_110 Hb_002960_010 Hb_002960_010 Hb_005168_030--Hb_002960_010 Hb_002003_030 Hb_002003_030 Hb_005168_030--Hb_002003_030 Hb_006916_020 Hb_006916_020 Hb_000753_180--Hb_006916_020 Hb_000753_180--Hb_000836_260 Hb_000753_180--Hb_005333_210 Hb_000753_180--Hb_009150_060 Hb_001358_120--Hb_009150_060 Hb_003842_010 Hb_003842_010 Hb_001358_120--Hb_003842_010 Hb_001358_120--Hb_001300_140 Hb_002304_190 Hb_002304_190 Hb_001358_120--Hb_002304_190 Hb_002475_030 Hb_002475_030 Hb_001358_120--Hb_002475_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.173854 0.598517 0.175905 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.05531 0.453797

CAGE analysis