Hb_011452_020

Information

Type transcription factor
Description TF Family: LOB
Location Contig11452: 13536-16808
Sequence    

Annotation

kegg
ID pxb:103945112
description LOB domain-containing protein 4
nr
ID XP_012074020.1
description PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
swissprot
ID Q9SHE9
description LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1
trembl
ID A0A067KK06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08592 PE=4 SV=1
Gene Ontology
ID GO:0004088
description lob domain-containing protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011452_020 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
2 Hb_000077_450 0.0415772069 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_000967_010 0.0971852666 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
4 Hb_021418_010 0.1067715735 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
5 Hb_006120_010 0.1119544888 - - invertase inhibitor [Manihot esculenta]
6 Hb_008727_030 0.1149006173 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003435_070 0.1254843789 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
8 Hb_118707_020 0.1297224551 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003058_180 0.1302029635 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
10 Hb_188923_010 0.1345242419 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
11 Hb_005144_180 0.1372945158 - - PREDICTED: protein enabled homolog [Populus euphratica]
12 Hb_011139_010 0.1432009655 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_000380_210 0.144182684 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
14 Hb_000676_380 0.1446548334 - - cytochrome P450 family protein [Populus trichocarpa]
15 Hb_001148_050 0.1450688574 - - -
16 Hb_135811_040 0.1472567061 - - conserved hypothetical protein [Ricinus communis]
17 Hb_159015_010 0.1474465439 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_001863_080 0.1492954002 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
19 Hb_022181_010 0.1516504227 - - PREDICTED: peroxidase 19 [Jatropha curcas]
20 Hb_003090_230 0.1524559301 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011452_020 Hb_011452_020 Hb_000077_450 Hb_000077_450 Hb_011452_020--Hb_000077_450 Hb_000967_010 Hb_000967_010 Hb_011452_020--Hb_000967_010 Hb_021418_010 Hb_021418_010 Hb_011452_020--Hb_021418_010 Hb_006120_010 Hb_006120_010 Hb_011452_020--Hb_006120_010 Hb_008727_030 Hb_008727_030 Hb_011452_020--Hb_008727_030 Hb_003435_070 Hb_003435_070 Hb_011452_020--Hb_003435_070 Hb_000077_450--Hb_021418_010 Hb_000077_450--Hb_006120_010 Hb_000077_450--Hb_000967_010 Hb_010571_010 Hb_010571_010 Hb_000077_450--Hb_010571_010 Hb_003058_180 Hb_003058_180 Hb_000077_450--Hb_003058_180 Hb_118707_020 Hb_118707_020 Hb_000967_010--Hb_118707_020 Hb_188923_010 Hb_188923_010 Hb_000967_010--Hb_188923_010 Hb_000967_010--Hb_008727_030 Hb_000967_010--Hb_003435_070 Hb_135811_040 Hb_135811_040 Hb_000967_010--Hb_135811_040 Hb_081282_010 Hb_081282_010 Hb_021418_010--Hb_081282_010 Hb_001596_030 Hb_001596_030 Hb_021418_010--Hb_001596_030 Hb_007181_080 Hb_007181_080 Hb_021418_010--Hb_007181_080 Hb_003090_230 Hb_003090_230 Hb_021418_010--Hb_003090_230 Hb_006120_010--Hb_003058_180 Hb_046191_010 Hb_046191_010 Hb_006120_010--Hb_046191_010 Hb_002499_020 Hb_002499_020 Hb_006120_010--Hb_002499_020 Hb_000230_160 Hb_000230_160 Hb_006120_010--Hb_000230_160 Hb_006120_010--Hb_188923_010 Hb_008727_030--Hb_118707_020 Hb_008727_030--Hb_003435_070 Hb_003789_020 Hb_003789_020 Hb_008727_030--Hb_003789_020 Hb_005144_180 Hb_005144_180 Hb_008727_030--Hb_005144_180 Hb_011139_010 Hb_011139_010 Hb_008727_030--Hb_011139_010 Hb_005333_120 Hb_005333_120 Hb_003435_070--Hb_005333_120 Hb_001856_150 Hb_001856_150 Hb_003435_070--Hb_001856_150 Hb_003435_070--Hb_118707_020 Hb_003435_070--Hb_003058_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.313155 0.0460921 1.97921 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.81342 0.221525

CAGE analysis