Hb_011457_050

Information

Type -
Description -
Location Contig11457: 28029-31961
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05080g
description POPTRDRAFT_643276; hypothetical protein
nr
ID XP_012092196.1
description PREDICTED: TP53-regulating kinase [Jatropha curcas]
swissprot
ID Q54W07
description EKC/KEOPS complex subunit bud32 OS=Dictyostelium discoideum GN=bud32 PE=3 SV=1
trembl
ID A0A067JC42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21892 PE=4 SV=1
Gene Ontology
ID GO:0004674
description ekc keops complex subunit bud32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04394: 28030-28239 , PASA_asmbl_04395: 28317-28585 , PASA_asmbl_04396: 29868-31914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011457_050 0.0 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
2 Hb_004324_270 0.0617681425 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
3 Hb_002408_020 0.0794406981 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
4 Hb_003768_030 0.0824313866 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
5 Hb_000061_210 0.0842862356 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
6 Hb_000566_120 0.085428275 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
7 Hb_002183_060 0.0875461477 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
8 Hb_003622_030 0.0880362644 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
9 Hb_002609_200 0.0887046352 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_001322_110 0.0892042392 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001728_060 0.089569244 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
12 Hb_000107_150 0.0938239271 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
13 Hb_012799_170 0.0939965431 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
14 Hb_002014_030 0.0942831378 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
15 Hb_008494_100 0.0953419293 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
16 Hb_000046_050 0.0965585556 - - PREDICTED: LEC14B homolog [Jatropha curcas]
17 Hb_006198_070 0.0978928495 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
18 Hb_004586_420 0.0986329562 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
19 Hb_001240_010 0.0992613556 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
20 Hb_010361_010 0.0994129086 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]

Gene co-expression network

sample Hb_011457_050 Hb_011457_050 Hb_004324_270 Hb_004324_270 Hb_011457_050--Hb_004324_270 Hb_002408_020 Hb_002408_020 Hb_011457_050--Hb_002408_020 Hb_003768_030 Hb_003768_030 Hb_011457_050--Hb_003768_030 Hb_000061_210 Hb_000061_210 Hb_011457_050--Hb_000061_210 Hb_000566_120 Hb_000566_120 Hb_011457_050--Hb_000566_120 Hb_002183_060 Hb_002183_060 Hb_011457_050--Hb_002183_060 Hb_000046_050 Hb_000046_050 Hb_004324_270--Hb_000046_050 Hb_005446_010 Hb_005446_010 Hb_004324_270--Hb_005446_010 Hb_004324_270--Hb_002408_020 Hb_004324_270--Hb_003768_030 Hb_004324_270--Hb_002183_060 Hb_002408_020--Hb_000061_210 Hb_000260_030 Hb_000260_030 Hb_002408_020--Hb_000260_030 Hb_029879_130 Hb_029879_130 Hb_002408_020--Hb_029879_130 Hb_012675_050 Hb_012675_050 Hb_002408_020--Hb_012675_050 Hb_001322_110 Hb_001322_110 Hb_002408_020--Hb_001322_110 Hb_000053_020 Hb_000053_020 Hb_003768_030--Hb_000053_020 Hb_001195_200 Hb_001195_200 Hb_003768_030--Hb_001195_200 Hb_008453_030 Hb_008453_030 Hb_003768_030--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_003768_030--Hb_001489_080 Hb_012423_030 Hb_012423_030 Hb_003768_030--Hb_012423_030 Hb_103118_010 Hb_103118_010 Hb_000061_210--Hb_103118_010 Hb_000061_210--Hb_008453_030 Hb_000061_210--Hb_012675_050 Hb_000421_220 Hb_000421_220 Hb_000061_210--Hb_000421_220 Hb_001049_110 Hb_001049_110 Hb_000061_210--Hb_001049_110 Hb_000045_310 Hb_000045_310 Hb_000566_120--Hb_000045_310 Hb_006573_190 Hb_006573_190 Hb_000566_120--Hb_006573_190 Hb_001931_010 Hb_001931_010 Hb_000566_120--Hb_001931_010 Hb_012799_170 Hb_012799_170 Hb_000566_120--Hb_012799_170 Hb_010361_010 Hb_010361_010 Hb_000566_120--Hb_010361_010 Hb_000390_300 Hb_000390_300 Hb_000566_120--Hb_000390_300 Hb_002183_060--Hb_000421_220 Hb_001386_040 Hb_001386_040 Hb_002183_060--Hb_001386_040 Hb_002183_060--Hb_008453_030 Hb_015934_070 Hb_015934_070 Hb_002183_060--Hb_015934_070 Hb_031862_100 Hb_031862_100 Hb_002183_060--Hb_031862_100 Hb_003697_040 Hb_003697_040 Hb_002183_060--Hb_003697_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.24349 3.17084 6.45517 6.69469 5.69191 5.7657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.19094 16.1373 9.45287 7.08223 11.4767

CAGE analysis