Hb_011457_130

Information

Type -
Description -
Location Contig11457: 105784-111680
Sequence    

Annotation

kegg
ID rcu:RCOM_0646080
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_012092181.1
description PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
swissprot
ID Q2QMH1
description Serine/threonine-protein kinase Nek2 OS=Oryza sativa subsp. japonica GN=NEK2 PE=2 SV=1
trembl
ID A0A067JF55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21884 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase nek2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04410: 106615-111734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011457_130 0.0 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
2 Hb_005694_180 0.1278552935 - - PREDICTED: cytochrome b5 [Jatropha curcas]
3 Hb_003430_080 0.1322388033 - - zinc finger protein, putative [Ricinus communis]
4 Hb_000740_090 0.1405274452 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001053_210 0.1413561797 - - -
6 Hb_000940_210 0.1464089775 - - cyclophilin [Hevea brasiliensis]
7 Hb_000003_030 0.1623674365 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_001195_420 0.1650800507 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
9 Hb_023226_030 0.1675915693 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
10 Hb_000258_040 0.1701332498 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
11 Hb_000237_020 0.1726463197 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
12 Hb_000134_120 0.1726828073 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
13 Hb_034507_060 0.17269923 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
14 Hb_118507_010 0.1737433775 - - hypothetical protein VITISV_019292 [Vitis vinifera]
15 Hb_010872_040 0.1754703554 - - hypothetical protein F775_31993 [Aegilops tauschii]
16 Hb_003227_010 0.176271096 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
17 Hb_000917_240 0.1781323933 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
18 Hb_001009_150 0.1795620466 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
19 Hb_000062_530 0.1803427524 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
20 Hb_004055_050 0.1812712427 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_011457_130 Hb_011457_130 Hb_005694_180 Hb_005694_180 Hb_011457_130--Hb_005694_180 Hb_003430_080 Hb_003430_080 Hb_011457_130--Hb_003430_080 Hb_000740_090 Hb_000740_090 Hb_011457_130--Hb_000740_090 Hb_001053_210 Hb_001053_210 Hb_011457_130--Hb_001053_210 Hb_000940_210 Hb_000940_210 Hb_011457_130--Hb_000940_210 Hb_000003_030 Hb_000003_030 Hb_011457_130--Hb_000003_030 Hb_005694_180--Hb_003430_080 Hb_034507_060 Hb_034507_060 Hb_005694_180--Hb_034507_060 Hb_023226_030 Hb_023226_030 Hb_005694_180--Hb_023226_030 Hb_001195_420 Hb_001195_420 Hb_005694_180--Hb_001195_420 Hb_000309_030 Hb_000309_030 Hb_005694_180--Hb_000309_030 Hb_012760_090 Hb_012760_090 Hb_005694_180--Hb_012760_090 Hb_003430_080--Hb_000003_030 Hb_003430_080--Hb_000740_090 Hb_003430_080--Hb_001195_420 Hb_003430_080--Hb_023226_030 Hb_001009_150 Hb_001009_150 Hb_003430_080--Hb_001009_150 Hb_000740_090--Hb_001053_210 Hb_147245_010 Hb_147245_010 Hb_000740_090--Hb_147245_010 Hb_001545_130 Hb_001545_130 Hb_000740_090--Hb_001545_130 Hb_000740_090--Hb_000940_210 Hb_000740_090--Hb_034507_060 Hb_001053_210--Hb_000940_210 Hb_001053_210--Hb_003430_080 Hb_001053_210--Hb_023226_030 Hb_001053_210--Hb_147245_010 Hb_172706_020 Hb_172706_020 Hb_000940_210--Hb_172706_020 Hb_002374_270 Hb_002374_270 Hb_000940_210--Hb_002374_270 Hb_124677_030 Hb_124677_030 Hb_000940_210--Hb_124677_030 Hb_000581_030 Hb_000581_030 Hb_000940_210--Hb_000581_030 Hb_000940_210--Hb_003430_080 Hb_000003_030--Hb_001545_130 Hb_019654_060 Hb_019654_060 Hb_000003_030--Hb_019654_060 Hb_004032_210 Hb_004032_210 Hb_000003_030--Hb_004032_210 Hb_000003_030--Hb_000581_030 Hb_000000_330 Hb_000000_330 Hb_000003_030--Hb_000000_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.56066 2.68442 4.3961 7.59638 0.614288 1.11414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09266 0.687797 0.685275 3.87774 0.509176

CAGE analysis