Hb_011457_140

Information

Type -
Description -
Location Contig11457: 113018-115089
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05010g
description POPTRDRAFT_798544; hypothetical protein
nr
ID XP_012092180.1
description PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JC74
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21883 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011457_140 0.0 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
2 Hb_000358_220 0.054452005 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
3 Hb_008642_060 0.0570572685 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
4 Hb_000300_030 0.0668355265 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
5 Hb_000008_280 0.0823509117 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
6 Hb_010315_020 0.082398905 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
7 Hb_000173_160 0.0825206392 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000066_150 0.0828301912 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
9 Hb_001541_150 0.0835882664 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001414_010 0.0838419443 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
11 Hb_005305_130 0.0838445027 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
12 Hb_003661_010 0.0867203851 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
13 Hb_005305_100 0.0870301551 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
14 Hb_003929_210 0.0880226144 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
15 Hb_000260_760 0.088395511 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
16 Hb_005649_080 0.0892725647 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
17 Hb_000684_350 0.0901198595 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
18 Hb_009476_120 0.090710067 - - Clathrin heavy chain 1 [Glycine soja]
19 Hb_000179_190 0.0909605513 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
20 Hb_023344_140 0.0911962887 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]

Gene co-expression network

sample Hb_011457_140 Hb_011457_140 Hb_000358_220 Hb_000358_220 Hb_011457_140--Hb_000358_220 Hb_008642_060 Hb_008642_060 Hb_011457_140--Hb_008642_060 Hb_000300_030 Hb_000300_030 Hb_011457_140--Hb_000300_030 Hb_000008_280 Hb_000008_280 Hb_011457_140--Hb_000008_280 Hb_010315_020 Hb_010315_020 Hb_011457_140--Hb_010315_020 Hb_000173_160 Hb_000173_160 Hb_011457_140--Hb_000173_160 Hb_003929_210 Hb_003929_210 Hb_000358_220--Hb_003929_210 Hb_000358_220--Hb_008642_060 Hb_170077_010 Hb_170077_010 Hb_000358_220--Hb_170077_010 Hb_000066_150 Hb_000066_150 Hb_000358_220--Hb_000066_150 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350 Hb_008642_060--Hb_003929_210 Hb_000179_190 Hb_000179_190 Hb_008642_060--Hb_000179_190 Hb_008642_060--Hb_000008_280 Hb_000030_140 Hb_000030_140 Hb_008642_060--Hb_000030_140 Hb_003661_010 Hb_003661_010 Hb_000300_030--Hb_003661_010 Hb_005305_100 Hb_005305_100 Hb_000300_030--Hb_005305_100 Hb_001541_150 Hb_001541_150 Hb_000300_030--Hb_001541_150 Hb_001414_010 Hb_001414_010 Hb_000300_030--Hb_001414_010 Hb_000300_030--Hb_000358_220 Hb_013405_180 Hb_013405_180 Hb_000008_280--Hb_013405_180 Hb_000008_280--Hb_000300_030 Hb_000008_280--Hb_000358_220 Hb_000008_280--Hb_000179_190 Hb_000212_420 Hb_000212_420 Hb_010315_020--Hb_000212_420 Hb_010315_020--Hb_000066_150 Hb_008014_040 Hb_008014_040 Hb_010315_020--Hb_008014_040 Hb_000588_080 Hb_000588_080 Hb_010315_020--Hb_000588_080 Hb_001776_020 Hb_001776_020 Hb_010315_020--Hb_001776_020 Hb_044486_020 Hb_044486_020 Hb_010315_020--Hb_044486_020 Hb_000173_160--Hb_000300_030 Hb_000173_160--Hb_000008_280 Hb_000173_160--Hb_008642_060 Hb_000173_160--Hb_000358_220 Hb_005649_080 Hb_005649_080 Hb_000173_160--Hb_005649_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2214 2.91527 2.48752 2.46922 1.00592 1.77658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.785157 0.563966 0.704202 1.79217 3.19164

CAGE analysis