Hb_011457_170

Information

Type -
Description -
Location Contig11457: 133656-135010
Sequence    

Annotation

kegg
ID vvi:100243499
description chlorophyllase-1
nr
ID XP_012092177.1
description PREDICTED: chlorophyllase-1-like [Jatropha curcas]
swissprot
ID Q9LE89
description Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1
trembl
ID A0A067JPE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21880 PE=4 SV=1
Gene Ontology
ID GO:0047746
description low quality protein: chlorophyllase-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04418: 133571-135037
cDNA
(Sanger)
(ID:Location)		 009_F03.ab1: 133634-134431 , 045_B13.ab1: 133571-134474

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011457_170 0.0 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
2 Hb_010417_020 0.094883034 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
3 Hb_001488_100 0.1214744717 - - -
4 Hb_001946_320 0.1216493462 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
5 Hb_004453_140 0.1232702237 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
6 Hb_005000_290 0.1238873653 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
7 Hb_000157_010 0.1283177211 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
8 Hb_010589_040 0.1283758631 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000329_600 0.1317676839 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
10 Hb_026988_020 0.1334342273 - - outward rectifying K+ channel [Hevea brasiliensis]
11 Hb_015934_020 0.1343972869 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
12 Hb_002307_090 0.1392580252 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
13 Hb_003497_030 0.1417716746 - - ADP-ribosylation factor, putative [Ricinus communis]
14 Hb_002392_040 0.1459562926 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000861_040 0.1462895278 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
16 Hb_001232_130 0.1477914288 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
17 Hb_000427_110 0.1509984088 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
18 Hb_005653_120 0.1527085498 - - PREDICTED: fatty acyl-CoA reductase 3-like isoform X2 [Prunus mume]
19 Hb_094744_010 0.1533735017 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
20 Hb_001143_090 0.1537451634 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]

Gene co-expression network

sample Hb_011457_170 Hb_011457_170 Hb_010417_020 Hb_010417_020 Hb_011457_170--Hb_010417_020 Hb_001488_100 Hb_001488_100 Hb_011457_170--Hb_001488_100 Hb_001946_320 Hb_001946_320 Hb_011457_170--Hb_001946_320 Hb_004453_140 Hb_004453_140 Hb_011457_170--Hb_004453_140 Hb_005000_290 Hb_005000_290 Hb_011457_170--Hb_005000_290 Hb_000157_010 Hb_000157_010 Hb_011457_170--Hb_000157_010 Hb_010417_020--Hb_000157_010 Hb_094744_010 Hb_094744_010 Hb_010417_020--Hb_094744_010 Hb_006594_020 Hb_006594_020 Hb_010417_020--Hb_006594_020 Hb_010589_040 Hb_010589_040 Hb_010417_020--Hb_010589_040 Hb_010417_020--Hb_004453_140 Hb_002301_320 Hb_002301_320 Hb_001488_100--Hb_002301_320 Hb_003497_030 Hb_003497_030 Hb_001488_100--Hb_003497_030 Hb_002835_170 Hb_002835_170 Hb_001488_100--Hb_002835_170 Hb_001606_070 Hb_001606_070 Hb_001488_100--Hb_001606_070 Hb_000340_430 Hb_000340_430 Hb_001488_100--Hb_000340_430 Hb_002307_090 Hb_002307_090 Hb_001946_320--Hb_002307_090 Hb_001232_130 Hb_001232_130 Hb_001946_320--Hb_001232_130 Hb_001946_320--Hb_010589_040 Hb_000861_040 Hb_000861_040 Hb_001946_320--Hb_000861_040 Hb_015934_020 Hb_015934_020 Hb_001946_320--Hb_015934_020 Hb_007229_060 Hb_007229_060 Hb_001946_320--Hb_007229_060 Hb_002983_030 Hb_002983_030 Hb_004453_140--Hb_002983_030 Hb_004453_140--Hb_015934_020 Hb_000193_240 Hb_000193_240 Hb_004453_140--Hb_000193_240 Hb_000329_600 Hb_000329_600 Hb_004453_140--Hb_000329_600 Hb_001143_090 Hb_001143_090 Hb_004453_140--Hb_001143_090 Hb_005000_290--Hb_015934_020 Hb_025087_010 Hb_025087_010 Hb_005000_290--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_005000_290--Hb_183963_020 Hb_005000_290--Hb_007229_060 Hb_005000_290--Hb_000329_600 Hb_005000_290--Hb_002307_090 Hb_152439_020 Hb_152439_020 Hb_000157_010--Hb_152439_020 Hb_001153_220 Hb_001153_220 Hb_000157_010--Hb_001153_220 Hb_001856_020 Hb_001856_020 Hb_000157_010--Hb_001856_020 Hb_024952_010 Hb_024952_010 Hb_000157_010--Hb_024952_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
291.065 17.8894 5.08303 78.1281 380.366 265.522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
328.15 614.334 740.399 85.3508 5.44486

CAGE analysis