Hb_011465_040

Information

Type -
Description -
Location Contig11465: 48587-53222
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa013639mg
description hypothetical protein
nr
ID XP_012070391.1
description PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
swissprot
ID Q6NQ54
description Transcription and mRNA export factor SUS1 OS=Arabidopsis thaliana GN=SUS1 PE=3 SV=1
trembl
ID M5WXJ9
description Transcription and mRNA export factor SUS1 OS=Prunus persica GN=SUS1 PE=3 SV=1
Gene Ontology
ID GO:0000124
description transcription and mrna export factor sus1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04435: 48573-51605 , PASA_asmbl_04436: 49097-51581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011465_040 0.0 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
2 Hb_005701_020 0.0581096271 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
3 Hb_000030_100 0.0642752911 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
4 Hb_009404_020 0.0690610631 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000376_050 0.0750457188 - - polyadenylate-binding protein, putative [Ricinus communis]
6 Hb_002918_200 0.0752818051 - - -
7 Hb_000703_140 0.0773019934 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
8 Hb_004108_230 0.0799219619 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
9 Hb_008289_060 0.0803174171 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
10 Hb_000134_330 0.0822247634 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
11 Hb_001427_120 0.0828286597 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
12 Hb_000170_010 0.0829442847 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_001584_070 0.0840578961 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004837_140 0.0844099782 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
15 Hb_001824_070 0.0869656706 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
16 Hb_002097_110 0.0875115729 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_011139_020 0.0875424112 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
18 Hb_000883_050 0.0875752356 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
19 Hb_000465_060 0.0877306671 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
20 Hb_001383_060 0.0885077959 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_011465_040 Hb_011465_040 Hb_005701_020 Hb_005701_020 Hb_011465_040--Hb_005701_020 Hb_000030_100 Hb_000030_100 Hb_011465_040--Hb_000030_100 Hb_009404_020 Hb_009404_020 Hb_011465_040--Hb_009404_020 Hb_000376_050 Hb_000376_050 Hb_011465_040--Hb_000376_050 Hb_002918_200 Hb_002918_200 Hb_011465_040--Hb_002918_200 Hb_000703_140 Hb_000703_140 Hb_011465_040--Hb_000703_140 Hb_002296_060 Hb_002296_060 Hb_005701_020--Hb_002296_060 Hb_000134_330 Hb_000134_330 Hb_005701_020--Hb_000134_330 Hb_000580_080 Hb_000580_080 Hb_005701_020--Hb_000580_080 Hb_001818_020 Hb_001818_020 Hb_005701_020--Hb_001818_020 Hb_000025_600 Hb_000025_600 Hb_005701_020--Hb_000025_600 Hb_008289_060 Hb_008289_060 Hb_000030_100--Hb_008289_060 Hb_000030_100--Hb_002918_200 Hb_000089_160 Hb_000089_160 Hb_000030_100--Hb_000089_160 Hb_003226_280 Hb_003226_280 Hb_000030_100--Hb_003226_280 Hb_001109_020 Hb_001109_020 Hb_000030_100--Hb_001109_020 Hb_001616_060 Hb_001616_060 Hb_009404_020--Hb_001616_060 Hb_000487_310 Hb_000487_310 Hb_009404_020--Hb_000487_310 Hb_004108_230 Hb_004108_230 Hb_009404_020--Hb_004108_230 Hb_000922_270 Hb_000922_270 Hb_009404_020--Hb_000922_270 Hb_009404_020--Hb_002918_200 Hb_000956_010 Hb_000956_010 Hb_000376_050--Hb_000956_010 Hb_002603_100 Hb_002603_100 Hb_000376_050--Hb_002603_100 Hb_004662_030 Hb_004662_030 Hb_000376_050--Hb_004662_030 Hb_001427_120 Hb_001427_120 Hb_000376_050--Hb_001427_120 Hb_001243_050 Hb_001243_050 Hb_000376_050--Hb_001243_050 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050 Hb_004837_140 Hb_004837_140 Hb_002918_200--Hb_004837_140 Hb_002918_200--Hb_004108_230 Hb_000834_270 Hb_000834_270 Hb_002918_200--Hb_000834_270 Hb_003175_040 Hb_003175_040 Hb_002918_200--Hb_003175_040 Hb_000170_010 Hb_000170_010 Hb_002918_200--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_002918_200--Hb_002027_210 Hb_000260_080 Hb_000260_080 Hb_000703_140--Hb_000260_080 Hb_011794_070 Hb_011794_070 Hb_000703_140--Hb_011794_070 Hb_027472_180 Hb_027472_180 Hb_000703_140--Hb_027472_180 Hb_009711_030 Hb_009711_030 Hb_000703_140--Hb_009711_030 Hb_000703_140--Hb_000376_050 Hb_000883_050 Hb_000883_050 Hb_000703_140--Hb_000883_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5676 5.0154 3.73425 3.62827 18.6341 19.7157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.6312 40.3118 23.6741 9.81734 5.52794

CAGE analysis